View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11831_low_6 (Length: 550)

Name: NF11831_low_6
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11831_low_6
NF11831_low_6
[»] chr4 (35 HSPs)
chr4 (16-529)||(33262573-33263094)
chr4 (418-529)||(34778364-34778475)
chr4 (418-529)||(3952191-3952302)
chr4 (418-529)||(5763183-5763294)
chr4 (418-529)||(18207061-18207172)
chr4 (418-529)||(19901939-19902050)
chr4 (418-518)||(12241440-12241540)
chr4 (418-529)||(23610585-23610696)
chr4 (418-529)||(56558222-56558333)
chr4 (418-527)||(38079743-38079852)
chr4 (418-498)||(12153114-12153194)
chr4 (418-530)||(5416485-5416599)
chr4 (442-529)||(30567868-30567955)
chr4 (418-529)||(47922096-47922207)
chr4 (454-529)||(12312497-12312572)
chr4 (418-527)||(33247153-33247260)
chr4 (418-487)||(52018726-52018795)
chr4 (418-482)||(12312571-12312635)
chr4 (426-529)||(39862468-39862571)
chr4 (418-490)||(17080700-17080772)
chr4 (418-527)||(24073560-24073668)
chr4 (419-524)||(31862246-31862351)
chr4 (422-526)||(47922391-47922495)
chr4 (440-490)||(43447640-43447691)
chr4 (440-525)||(1871243-1871327)
chr4 (466-541)||(5524438-5524513)
chr4 (420-498)||(33841856-33841934)
chr4 (417-529)||(37002272-37002374)
chr4 (478-526)||(34927488-34927536)
chr4 (419-529)||(25442195-25442306)
chr4 (419-482)||(26428587-26428650)
chr4 (417-529)||(56269097-56269200)
chr4 (466-529)||(56453841-56453904)
chr4 (419-485)||(32366432-32366498)
chr4 (478-518)||(52030726-52030766)
[»] scaffold0012 (1 HSPs)
scaffold0012 (418-529)||(208006-208117)
[»] chr6 (18 HSPs)
chr6 (418-529)||(29698106-29698217)
chr6 (418-529)||(1249167-1249278)
chr6 (418-529)||(4804391-4804502)
chr6 (398-529)||(21159390-21159523)
chr6 (418-527)||(7162027-7162136)
chr6 (418-529)||(17944105-17944216)
chr6 (420-527)||(12412582-12412689)
chr6 (418-490)||(32737817-32737889)
chr6 (418-529)||(27826481-27826592)
chr6 (418-486)||(30460763-30460831)
chr6 (419-526)||(227588-227695)
chr6 (450-525)||(13089774-13089849)
chr6 (442-496)||(1516243-1516297)
chr6 (442-496)||(1518332-1518386)
chr6 (462-528)||(2800633-2800699)
chr6 (470-526)||(13888547-13888603)
chr6 (466-529)||(24484870-24484933)
chr6 (440-470)||(17398774-17398804)
[»] chr5 (19 HSPs)
chr5 (418-541)||(32129626-32129749)
chr5 (418-529)||(4895756-4895867)
chr5 (418-529)||(35660630-35660741)
chr5 (418-529)||(11775735-11775847)
chr5 (422-529)||(37266678-37266785)
chr5 (418-529)||(14349747-14349857)
chr5 (419-529)||(40753183-40753293)
chr5 (440-529)||(18625442-18625531)
chr5 (418-527)||(39902358-39902467)
chr5 (418-529)||(4592744-4592854)
chr5 (418-527)||(13032062-13032170)
chr5 (420-529)||(3057175-3057284)
chr5 (424-498)||(1475690-1475764)
chr5 (422-529)||(34827140-34827246)
chr5 (418-540)||(8440981-8441103)
chr5 (440-529)||(32793339-32793428)
chr5 (426-529)||(3057367-3057470)
chr5 (419-470)||(43309062-43309113)
chr5 (446-518)||(28142807-28142881)
[»] chr2 (18 HSPs)
chr2 (418-529)||(35316768-35316879)
chr2 (418-529)||(28564834-28564946)
chr2 (418-529)||(13238624-13238735)
chr2 (418-498)||(39465718-39465798)
chr2 (418-529)||(23259508-23259619)
chr2 (398-498)||(45625114-45625216)
chr2 (418-489)||(374499-374570)
chr2 (418-489)||(41983401-41983471)
chr2 (420-480)||(2061322-2061382)
chr2 (418-488)||(12949413-12949482)
chr2 (462-530)||(21454514-21454582)
chr2 (479-528)||(15709772-15709821)
chr2 (417-459)||(374945-374987)
chr2 (417-459)||(3354844-3354886)
chr2 (417-459)||(8988808-8988850)
chr2 (417-459)||(29188605-29188647)
chr2 (419-468)||(30824122-30824171)
chr2 (419-468)||(41073021-41073070)
[»] chr7 (21 HSPs)
chr7 (418-527)||(21151095-21151204)
chr7 (418-529)||(45260448-45260559)
chr7 (418-541)||(16366461-16366584)
chr7 (418-529)||(7362511-7362622)
chr7 (418-529)||(9559075-9559186)
chr7 (418-529)||(25084749-25084860)
chr7 (418-529)||(4888410-4888521)
chr7 (418-529)||(18198199-18198310)
chr7 (418-529)||(12139271-12139381)
chr7 (418-529)||(44647908-44648018)
chr7 (419-526)||(47500307-47500414)
chr7 (418-521)||(47226103-47226205)
chr7 (419-526)||(33450450-33450557)
chr7 (450-528)||(39855835-39855913)
chr7 (418-525)||(29630991-29631098)
chr7 (419-529)||(32915903-32916010)
chr7 (440-497)||(40019646-40019703)
chr7 (417-459)||(19889115-19889157)
chr7 (418-526)||(34985970-34986077)
chr7 (434-487)||(35265232-35265286)
chr7 (419-459)||(30588489-30588529)
[»] chr8 (20 HSPs)
chr8 (422-529)||(30426690-30426797)
chr8 (418-541)||(36991299-36991422)
chr8 (425-529)||(28069669-28069773)
chr8 (418-529)||(28318923-28319034)
chr8 (422-529)||(41511209-41511316)
chr8 (440-541)||(24101981-24102082)
chr8 (416-529)||(40695268-40695381)
chr8 (418-529)||(10672533-10672644)
chr8 (418-513)||(8412197-8412292)
chr8 (418-496)||(12177618-12177696)
chr8 (418-496)||(12422046-12422124)
chr8 (440-526)||(45113235-45113321)
chr8 (426-529)||(44859188-44859291)
chr8 (418-489)||(27490067-27490138)
chr8 (418-529)||(10652638-10652750)
chr8 (418-487)||(37966505-37966574)
chr8 (420-528)||(42761660-42761766)
chr8 (418-460)||(5033049-5033091)
chr8 (479-528)||(18689495-18689544)
chr8 (465-513)||(24557218-24557266)
[»] chr3 (22 HSPs)
chr3 (418-527)||(27033594-27033703)
chr3 (418-529)||(34373606-34373717)
chr3 (418-529)||(34373774-34373885)
chr3 (422-529)||(19830452-19830560)
chr3 (418-529)||(43719968-43720079)
chr3 (398-529)||(40851690-40851828)
chr3 (418-529)||(550837-550948)
chr3 (418-529)||(2229926-2230037)
chr3 (422-529)||(46167340-46167447)
chr3 (419-526)||(48084763-48084870)
chr3 (440-529)||(12402930-12403020)
chr3 (420-497)||(36354316-36354393)
chr3 (425-529)||(566795-566898)
chr3 (478-529)||(35963361-35963412)
chr3 (425-496)||(2310261-2310330)
chr3 (418-489)||(52859441-52859513)
chr3 (465-526)||(40810380-40810441)
chr3 (417-529)||(42613032-42613134)
chr3 (419-470)||(32577476-32577526)
chr3 (417-459)||(3009191-3009233)
chr3 (417-459)||(31523749-31523791)
chr3 (419-528)||(25285859-25285966)
[»] chr1 (28 HSPs)
chr1 (418-529)||(12151710-12151821)
chr1 (418-529)||(12380931-12381042)
chr1 (418-529)||(12384998-12385109)
chr1 (418-529)||(50484329-50484440)
chr1 (418-529)||(50294084-50294195)
chr1 (422-497)||(7841763-7841838)
chr1 (418-498)||(45977965-45978045)
chr1 (418-529)||(23861973-23862088)
chr1 (418-530)||(40328219-40328333)
chr1 (422-529)||(24977187-24977294)
chr1 (456-526)||(18976329-18976398)
chr1 (420-528)||(5047403-5047510)
chr1 (418-500)||(2845208-2845291)
chr1 (480-541)||(32361316-32361377)
chr1 (440-493)||(45970811-45970864)
chr1 (425-529)||(48327175-48327279)
chr1 (421-518)||(46608409-46608504)
chr1 (418-483)||(40988658-40988723)
chr1 (465-541)||(32618791-32618866)
chr1 (418-524)||(7783206-7783312)
chr1 (420-528)||(32887802-32887910)
chr1 (426-529)||(7844939-7845042)
chr1 (440-515)||(26372218-26372292)
chr1 (419-470)||(42720837-42720888)
chr1 (420-490)||(49384720-49384788)
chr1 (466-541)||(52280048-52280123)
chr1 (466-528)||(39426201-39426263)
chr1 (462-498)||(1228582-1228618)
[»] scaffold0035 (1 HSPs)
scaffold0035 (418-529)||(16418-16529)
[»] scaffold0006 (1 HSPs)
scaffold0006 (418-498)||(73892-73972)
[»] scaffold0250 (1 HSPs)
scaffold0250 (418-529)||(7090-7201)
[»] scaffold0456 (1 HSPs)
scaffold0456 (420-498)||(13641-13719)
[»] scaffold0126 (1 HSPs)
scaffold0126 (420-529)||(22463-22572)
[»] scaffold0009 (1 HSPs)
scaffold0009 (398-529)||(6456-6585)
[»] scaffold0008 (1 HSPs)
scaffold0008 (418-528)||(9223-9330)
[»] scaffold0468 (1 HSPs)
scaffold0468 (424-497)||(5559-5632)
[»] scaffold0062 (1 HSPs)
scaffold0062 (479-528)||(58684-58733)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Complemental strand, 33263094 - 33262573
Alignment:
Q  16 attttggttggtcttttctttggtagaccataattatcctaaatttttatccatttgc-----gtgagcaaaattggattcaatccccttttaattttca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||     |||||||||||||||||||||| ||||||||||||||    
T  33263094 attttggttggtcttttctttggtagaccataattatcctaaattt--atccatttgcttggcgtgagcaaaattggattcaatcaccttttaattttca 33262997  T
Q  111 actcttaatttcaaacataataaaaacacaagttgggatatattaaagtccttgtgccgtatccatgatcgagttattacatcattattatacacaaata 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33262996 actcttaatttcaaacataataaaaacacaagttgggatatattaaagtccttgtgccgtatccatgatcgagttattacatcattattatacacaaata 33262897  T
Q  211 gtctcttaataataaatgataattaagaccaagataaaccacccttgagggtgttaagcagacaaatcagctaattaattcttcttattcgtctcattta 310  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33262896 gtctcttaataataaaagataattaagaccaagataaaccacccttgagggtgttaagcagacaaatcagctaattaattcttcttattcgtctcattta 33262797  T
Q  311 tattcatgactcatttccatgtgggatggtatcatactttgagttattttctgttggtagagaggaatcaatcccacgnnnnnnnnngggttaggatcct 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||          | ||||||| ||    
T  33262796 tattcatgactcatttccatgtgggatggtatcatactttgagttattttcaattggtagagaggaatccatcccacgtttttttttagtttaggat-ct 33262698  T
Q  411 ctcca------tatttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctactta 504  Q
    |||||      ||||| || |||||||||||||  ||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |||    
T  33262697 ctccatttatgtatttttctatttcttcaatttggagagataaagacacataaaattttaaaaaaagtaaaatataattaatgatggtgggacctattta 33262598  T
Q  505 ttggtaggatccaccatctattttt 529  Q
     ||||||||||||||||||||||||    
T  33262597 gtggtaggatccaccatctattttt 33262573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 34778364 - 34778475
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  34778364 tttctccatttcttcaatgtggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggatcca 34778463  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  34778464 ccatctattttt 34778475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 3952302 - 3952191
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||| |||    
T  3952302 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgagacccacttagtggtaggaccca 3952203  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  3952202 ccatctattttt 3952191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 5763294 - 5763183
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  5763294 tttctccatttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 5763195  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  5763194 ccatctattttt 5763183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 18207172 - 18207061
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||| |||||||||||||  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| |||    
T  18207172 tttctcaatttcttcaatttggaaagataaagacacataaaatcttgaaaaaggtaaaatataattaatgatgatgggacccacttagtggtaggaccca 18207073  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  18207072 ccatctattttt 18207061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 19902050 - 19901939
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||| |||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  19902050 tttctctatttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 19901951  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  19901950 ccatctattttt 19901939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 418 - 518
Target Start/End: Complemental strand, 12241540 - 12241440
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  12241540 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 12241441  T
Q  518 c 518  Q
    |    
T  12241440 c 12241440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 23610585 - 23610696
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||| || |||    
T  23610585 tttctccatttcttcaatttggagagataaagatacataaaatcttgaaaaaagtaaaatatatttaatgatggtgggacccacttagtggtatgaccca 23610684  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  23610685 ccatctattttt 23610696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 56558222 - 56558333
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||| |||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| || ||||| |||    
T  56558222 tttctctatttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtgataggaccca 56558321  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  56558322 ccatctattttt 56558333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 418 - 527
Target Start/End: Complemental strand, 38079852 - 38079743
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||| | |||||| |||    
T  38079852 tttctccattttttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtggaatccacttagtagtaggaccca 38079753  T
Q  518 ccatctattt 527  Q
    ||||||||||    
T  38079752 ccatctattt 38079743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 418 - 498
Target Start/End: Original strand, 12153114 - 12153194
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacc 498  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12153114 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacc 12153194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 418 - 530
Target Start/End: Complemental strand, 5416599 - 5416485
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaa--gtaaaatataattaatgatgatgggacctacttattggtaggatc 515  Q
    ||||||||||||||||||||  | |||||||||||||||||||||| ||||||  |||||||||||||||||||| ||||||| ||||| |||||||| |    
T  5416599 tttctccatttcttcaatttggacagataaagacacataaaatctttaaaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggacc 5416500  T
Q  516 caccatctatttttg 530  Q
    ||| |||||||||||    
T  5416499 cacaatctatttttg 5416485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 442 - 529
Target Start/End: Original strand, 30567868 - 30567955
Alignment:
Q  442 agataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttt 529  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||    
T  30567868 agataaagacacataaaattttgaaaaaagtaaaatataattaatgatgatggaacccacttagtggtaggacccaccatctattttt 30567955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 47922207 - 47922096
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||| |||||||||||||| |||||| ||||||||| ||||||||| ||||||||| ||| ||| ||||| ||||| || |||    
T  47922207 tttctccatttcttcaatttagagagataaagacacgtaaaatattgaaaaaaataaaatatatttaatgatggtggaacccacttagtggtaagaccca 47922108  T
Q  518 ccatctattttt 529  Q
    | ||||||||||    
T  47922107 ctatctattttt 47922096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 454 - 529
Target Start/End: Complemental strand, 12312572 - 12312497
Alignment:
Q  454 ataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttt 529  Q
    |||||||||| || ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  12312572 ataaaatcttaaagaaagtaaaatataattaatgatgatgggacccacttagtggtaggatccaccatctattttt 12312497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 418 - 527
Target Start/End: Complemental strand, 33247260 - 33247153
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||| ||| | ||| |||||| | |||    
T  33247260 tttctccatttcttcaatttggagagataaagacacataaaatc--gaaaaaaataaaatataattaatgatggtggaacccatttagtggtagaaccca 33247163  T
Q  518 ccatctattt 527  Q
    ||||||||||    
T  33247162 ccatctattt 33247153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 418 - 487
Target Start/End: Original strand, 52018726 - 52018795
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatg 487  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52018726 tttctccatttcttcaatttggagagataaaaacacataaaatcttgaaaaaagtaaaatataattaatg 52018795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 418 - 482
Target Start/End: Complemental strand, 12312635 - 12312571
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataat 482  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  12312635 tttctccatttcttcaatttagagagataaagacacataaaattttgaaaaaagtaaaatataat 12312571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 426 - 529
Target Start/End: Original strand, 39862468 - 39862571
Alignment:
Q  426 tttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctat 525  Q
    ||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||  | ||| || |||||  ||||||||||    
T  39862468 tttcttcaatttggagagataaagacacataaaatcttaaaaaaagtaaaatataattaatgatggtggaactcatttagtgataggacacaccatctat 39862567  T
Q  526 tttt 529  Q
    ||||    
T  39862568 tttt 39862571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 418 - 490
Target Start/End: Complemental strand, 17080772 - 17080700
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatg 490  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||||||||| |||||||    
T  17080772 tttctccatttcttcaatttggagagataaagacagataaaatcttggaaaaagtaaaatataatgaatgatg 17080700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 418 - 527
Target Start/End: Original strand, 24073560 - 24073668
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||| |||||||| ||||  |||||| ||| ||||||||||||||||||||  || |||||||||||||||  |||||| ||||| |||||||| |||    
T  24073560 tttctcaatttcttccatttggagagatgaaggcacataaaatcttgaaaaaaa-aatatataattaatgatggcgggacccacttagtggtaggaccca 24073658  T
Q  518 ccatctattt 527  Q
    ||||||||||    
T  24073659 ccatctattt 24073668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 419 - 524
Target Start/End: Complemental strand, 31862351 - 31862246
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 518  Q
    ||||| |||||| | ||||  ||||||| ||||||| ||||| ||  ||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||    
T  31862351 ttctctatttctaccatttggagagatatagacacacaaaattttagaaaaagtaaaaaataattaatgatggtgggacccacttagtggtaggatccac 31862252  T
Q  519 catcta 524  Q
    ||||||    
T  31862251 catcta 31862246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 422 - 526
Target Start/End: Complemental strand, 47922495 - 47922391
Alignment:
Q  422 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccat 521  Q
    ||||||||| | |||| ||| |||| | ||||| ||| | ||||||||||||||| |||||||  |||||||||||| ||||| |||||||| |||||||    
T  47922495 tccatttctaccatttgtagtgatataaacacacaaagttttgaaaaaagtaaaaaataattatagatgatgggacccacttagtggtaggacccaccat 47922396  T
Q  522 ctatt 526  Q
    |||||    
T  47922395 ctatt 47922391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 490
Target Start/End: Complemental strand, 43447691 - 43447640
Alignment:
Q  440 agagataaagacacataaaa-tcttgaaaaaagtaaaatataattaatgatg 490  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  43447691 agagataaagacacataaaaattttgaaaaaagtaaaatataattaatgatg 43447640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 440 - 525
Target Start/End: Original strand, 1871243 - 1871327
Alignment:
Q  440 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctat 525  Q
    ||||||||||||||| | ||  ||||||||| || || ||||||||||||||||||||| ||||| | ||||||||||| ||||||    
T  1871243 agagataaagacacaaagaaatttgaaaaaa-tataaaataattaatgatgatgggacccacttagtagtaggatccactatctat 1871327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 541
Target Start/End: Original strand, 5524438 - 5524513
Alignment:
Q  466 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatttttgatgtccatctc 541  Q
    ||||||||||| ||||||||||||| ||||||| ||||| || ||||| ||||||  ||||||| ||||| |||||    
T  5524438 aaaaagtaaaaaataattaatgatggtgggacccacttactgataggacccaccacttattttttatgtctatctc 5524513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 498
Target Start/End: Complemental strand, 33841934 - 33841856
Alignment:
Q  420 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacc 498  Q
    |||||||||| || ||||  | ||||||||||||| ||||||||||||| |||| |  ||||||||||||| |||||||    
T  33841934 tctccatttcctccatttggaaagataaagacacaaaaaatcttgaaaagagtatacaataattaatgatggtgggacc 33841856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 529
Target Start/End: Complemental strand, 37002374 - 37002272
Alignment:
Q  417 atttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcc 516  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||          ||||||| ||||||||||||| ||||||| ||||| |  ||||||||    
T  37002374 atttctccatttgttccatttagagagataaagacacataaaa----------agtaaaaaataattaatgatggtgggacccacttagtaataggatcc 37002285  T
Q  517 accatctattttt 529  Q
    ||||  |||||||    
T  37002284 accacttattttt 37002272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 34927488 - 34927536
Alignment:
Q  478 ataattaatgatgatgggacctacttattggtaggatccaccatctatt 526  Q
    |||||||||||||||| ||| |||||| |||||||| ||||||||||||    
T  34927488 ataattaatgatgatgagacatacttaatggtaggacccaccatctatt 34927536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 529
Target Start/End: Complemental strand, 25442306 - 25442195
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaag-taaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||||||||||| ||||  ||||||||||||||| | |||  | ||||||| ||||| ||||||||||  | || || | ||||| |||||||| |||    
T  25442306 ttctccatttcttccatttggagagataaagacacacacaattataaaaaaagttaaaaaataattaatgtcggtgagatccacttagtggtaggaccca 25442207  T
Q  518 ccatctattttt 529  Q
    | ||||||||||    
T  25442206 caatctattttt 25442195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 482
Target Start/End: Original strand, 26428587 - 26428650
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataat 482  Q
    |||||||||||| ||||||  ||||||| ||||||| ||| | ||||||||||||||| |||||    
T  26428587 ttctccatttctacaatttggagagatatagacacacaaatttttgaaaaaagtaaaaaataat 26428650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 529
Target Start/End: Complemental strand, 56269200 - 56269097
Alignment:
Q  417 atttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcc 516  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||  |  ||||||       ||||||||||||| ||||||| ||||| |||||||| ||    
T  56269200 atttctccatttgttccatttagagagataaagacacataaaaagt--aaaaaa-------ataattaatgatggtgggacccacttagtggtaggaccc 56269110  T
Q  517 accatctattttt 529  Q
    ||||  |||||||    
T  56269109 accacttattttt 56269097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 529
Target Start/End: Complemental strand, 56453904 - 56453841
Alignment:
Q  466 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttt 529  Q
    ||||||||||| ||||| ||||||| ||||||| ||||| || ||||| |||||| ||||||||    
T  56453904 aaaaagtaaaaaataatgaatgatggtgggacccacttaatgataggacccaccacctattttt 56453841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 485
Target Start/End: Complemental strand, 32366498 - 32366432
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaa 485  Q
    |||||||||||||| ||||| ||||| |||||| | || ||| || |||||||||||| ||||||||    
T  32366498 ttctccatttcttctatttagagagacaaagacgcgtagaattttaaaaaaagtaaaaaataattaa 32366432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 518
Target Start/End: Complemental strand, 52030766 - 52030726
Alignment:
Q  478 ataattaatgatgatgggacctacttattggtaggatccac 518  Q
    ||||||||||||| ||||||| ||||||| |||||||||||    
T  52030766 ataattaatgatggtgggacccacttatttgtaggatccac 52030726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 208006 - 208117
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |||    
T  208006 tttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaagtaaaatataattaatgatgatgggacccacttagtggtaggaccca 208105  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  208106 ccatctattttt 208117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 5e-42; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 29698106 - 29698217
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  29698106 tttctccatttcttcaatttggagaaataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttaatggtaggatcca 29698205  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  29698206 ccatctattttt 29698217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 1249278 - 1249167
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  1249278 tttctccatttcttcaatttggaaagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 1249179  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  1249178 ccatctattttt 1249167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 4804391 - 4804502
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  4804391 tttctccatttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 4804490  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  4804491 ccatctattttt 4804502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 398 - 529
Target Start/End: Complemental strand, 21159523 - 21159390
Alignment:
Q  398 gggttaggatcctctccat--atttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggg 495  Q
    ||||||||||||||||| |  || | ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21159523 gggttaggatcctctccgtttatgtgtccatttcttcaatttggagatataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtggg 21159424  T
Q  496 acctacttattggtaggatccaccatctattttt 529  Q
    ||| ||||| |||||||| |||||||||||||||    
T  21159423 acccacttagtggtaggacccaccatctattttt 21159390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 418 - 527
Target Start/End: Original strand, 7162027 - 7162136
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | |||||| |||    
T  7162027 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtagtaggaccca 7162126  T
Q  518 ccatctattt 527  Q
    ||||||||||    
T  7162127 ccatctattt 7162136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 17944105 - 17944216
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| | ||| |||||||| | |    
T  17944105 tttctccatttcttcaatttggagagataaaaacacataaaatcttggaaaaagtaaaatataattaatgatggtgggacccatttagtggtaggaccta 17944204  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  17944205 ccatctattttt 17944216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 420 - 527
Target Start/End: Original strand, 12412582 - 12412689
Alignment:
Q  420 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccacc 519  Q
    ||||||||||||||||||  ||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||| |||||||| |||||    
T  12412582 tctccatttcttcaatttggagagataaaaatacataaaattttgaaaaaagtaaaatataattaatgatggtggaacccacttagtggtaggacccacc 12412681  T
Q  520 atctattt 527  Q
    ||||||||    
T  12412682 atctattt 12412689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 418 - 490
Target Start/End: Original strand, 32737817 - 32737889
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatg 490  Q
    ||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32737817 tttctccatttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatg 32737889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 27826481 - 27826592
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||| |||||||| ||||  ||||||||||||||||||||  ||  ||||| ||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  27826481 tttctcaatttcttccattttgagagataaagacacataaaaaattttaaaaaataaaatataattaatgatggtgggacccacttagtggtaggaccca 27826580  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  27826581 ccatctattttt 27826592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 418 - 486
Target Start/End: Original strand, 30460763 - 30460831
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaat 486  Q
    ||||| ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  30460763 tttcttcatttcttctatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaat 30460831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 419 - 526
Target Start/End: Complemental strand, 227695 - 227588
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 518  Q
    |||||||||||| ||||||  ||||||| ||||||| ||| | |||||||| |||||| ||||| ||||||||||||| | ||||| |||||||| ||||    
T  227695 ttctccatttctacaatttggagagatatagacacacaaagttttgaaaaaggtaaaaaataatcaatgatgatgggatccacttagtggtaggacccac 227596  T
Q  519 catctatt 526  Q
    ||||||||    
T  227595 catctatt 227588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 450 - 525
Target Start/End: Complemental strand, 13089849 - 13089774
Alignment:
Q  450 acacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctat 525  Q
    ||||||||||| ||||||||| ||||||||||||||||||| |||| || ||||| |||||||| |||||||||||    
T  13089849 acacataaaattttgaaaaaaataaaatataattaatgatggtggggcccacttagtggtaggacccaccatctat 13089774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 1516297 - 1516243
Alignment:
Q  442 agataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggga 496  Q
    ||||||| ||||||||||| || |||||||||||||||||||||||||| |||||    
T  1516297 agataaatacacataaaattttaaaaaaagtaaaatataattaatgatggtggga 1516243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 1518386 - 1518332
Alignment:
Q  442 agataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggga 496  Q
    ||||||| ||||||||||| || |||||||||||||||||||||||||| |||||    
T  1518386 agataaatacacataaaattttaaaaaaagtaaaatataattaatgatggtggga 1518332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 462 - 528
Target Start/End: Complemental strand, 2800699 - 2800633
Alignment:
Q  462 ttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatttt 528  Q
    ||||||||||||||| ||||| ||||||| ||||||| ||||| ||||| ||||||| |||||||||    
T  2800699 ttgaaaaaagtaaaaaataatcaatgatggtgggacccacttaatggtatgatccactatctatttt 2800633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 526
Target Start/End: Complemental strand, 13888603 - 13888547
Alignment:
Q  470 agtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatt 526  Q
    ||||||| ||||||||||||||||||||| | ||| |||||||| ||||||||||||    
T  13888603 agtaaaaaataattaatgatgatgggacccagttaatggtaggaaccaccatctatt 13888547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 529
Target Start/End: Original strand, 24484870 - 24484933
Alignment:
Q  466 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttt 529  Q
    ||||||||||| ||||||||||||| ||||||| ||||| || ||||| ||||||  |||||||    
T  24484870 aaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccaccacttattttt 24484933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 470
Target Start/End: Complemental strand, 17398804 - 17398774
Alignment:
Q  440 agagataaagacacataaaatcttgaaaaaa 470  Q
    |||||||||||||||||||||||||||||||    
T  17398804 agagataaagacacataaaatcttgaaaaaa 17398774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 418 - 541
Target Start/End: Complemental strand, 32129749 - 32129626
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  32129749 tttctccatttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 32129650  T
Q  518 ccatctatttttgatgtccatctc 541  Q
    ||||||||||||| |||| |||||    
T  32129649 ccatctatttttggtgtctatctc 32129626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 4895867 - 4895756
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  4895867 tttctccatttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 4895768  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  4895767 ccatctattttt 4895756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 35660741 - 35660630
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  35660741 tttctccgtttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 35660642  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  35660641 ccatctattttt 35660630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 11775735 - 11775847
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaa-aagtaaaatataattaatgatgatgggacctacttattggtaggatcc 516  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||| ||||| |||||||||||    
T  11775735 tttctccatttcttcaatttggagagataaaaacacataaaatcttgaaaaaaagtaaaatataattaatgacggtgggacccacttagtggtaggatcc 11775834  T
Q  517 accatctattttt 529  Q
    |||||||||||||    
T  11775835 accatctattttt 11775847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 422 - 529
Target Start/End: Original strand, 37266678 - 37266785
Alignment:
Q  422 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccat 521  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||||| || |||||||    
T  37266678 tccatttcttcaatttggagagataaagacacataaaatcttgaaaaaactaaaatataattaatgatggtgggacccacttagtggtatgacccaccat 37266777  T
Q  522 ctattttt 529  Q
    ||||||||    
T  37266778 ctattttt 37266785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 14349747 - 14349857
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||||||||||| |||||  | ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  14349747 tttctccatttctttaatttggaaagataaagacacataaa-tcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 14349845  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  14349846 ccatctattttt 14349857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 419 - 529
Target Start/End: Complemental strand, 40753293 - 40753183
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 518  Q
    ||||||||||||| |||||  |||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||    
T  40753293 ttctccatttctttaatttggagagataaaagcacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggacccac 40753194  T
Q  519 catctattttt 529  Q
    ||| |||||||    
T  40753193 catatattttt 40753183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 440 - 529
Target Start/End: Complemental strand, 18625531 - 18625442
Alignment:
Q  440 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttt 529  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||||    
T  18625531 agagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttt 18625442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 418 - 527
Target Start/End: Original strand, 39902358 - 39902467
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | | | ||| |||||||| |||    
T  39902358 tttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaagtaaaatataattaatgatggtggaatccatttagtggtaggaccca 39902457  T
Q  518 ccatctattt 527  Q
    ||||||||||    
T  39902458 ccatctattt 39902467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 4592744 - 4592854
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||||| || |||    
T  4592744 tttctccatttcttcaatttggagagataat-acacataaaatattgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaagaccca 4592842  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  4592843 ccatctattttt 4592854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 418 - 527
Target Start/End: Original strand, 13032062 - 13032170
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| | ||| ||||||||  ||    
T  13032062 tttctccatttcttcaatttggagagataaagacacataaaatctt-aaaaaaataaaatataattaatgatggtgggacccatttagtggtaggactca 13032160  T
Q  518 ccatctattt 527  Q
    ||||||||||    
T  13032161 ccatctattt 13032170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 420 - 529
Target Start/End: Complemental strand, 3057284 - 3057175
Alignment:
Q  420 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccacc 519  Q
    ||||||||||||| ||||  |||||||||||||| |||| | || ||||||||||||||||||||||||| ||| |||  ||||| ||||||||||||||    
T  3057284 tctccatttcttctatttgaagagataaagacacttaaattttttaaaaaagtaaaatataattaatgattatgtgactcacttaatggtaggatccacc 3057185  T
Q  520 atctattttt 529  Q
    ||||||||||    
T  3057184 atctattttt 3057175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 424 - 498
Target Start/End: Complemental strand, 1475764 - 1475690
Alignment:
Q  424 catttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacc 498  Q
    ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1475764 catttcttcaatttggagtgataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacc 1475690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 422 - 529
Target Start/End: Original strand, 34827140 - 34827246
Alignment:
Q  422 tccatttcttcaatttatagagataaagacacataaaatcttgaaaa-aagtaaaatataattaatgatgatgggacctacttattggtaggatccacca 520  Q
    |||||||||| |||||  |||||||||||||||  |||| ||||||| ||||||||||||||||| |||| ||||||| ||||| |||||||||||||||    
T  34827140 tccatttcttaaatttgaagagataaagacaca--aaattttgaaaaaaagtaaaatataattaaagatggtgggacccacttagtggtaggatccacca 34827237  T
Q  521 tctattttt 529  Q
    |||||||||    
T  34827238 tctattttt 34827246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 540
Target Start/End: Complemental strand, 8441103 - 8440981
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||| |||| |||||||  ||||||||| ||||||| |||||| |||||||||||||||||||||||||| ||||||  ||||| ||||| |   ||    
T  8441103 tttctccgtttcatcaatttggagagataaatacacatacaatcttaaaaaaagtaaaatataattaatgatggtgggacacacttagtggtatgtcgca 8441004  T
Q  518 ccatctatttttgatgtccatct 540  Q
    ||||||||||||| |||| ||||    
T  8441003 ccatctatttttggtgtctatct 8440981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 440 - 529
Target Start/End: Original strand, 32793339 - 32793428
Alignment:
Q  440 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttt 529  Q
    ||||||||||||  |||||||||||||||||||||||||||||| |||||  ||||||||||||| | ||| ||  || |||||||||||    
T  32793339 agagataaagacgaataaaatcttgaaaaaagtaaaatataattgatgattgtgggacctacttagtagtaagaatcatcatctattttt 32793428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 426 - 529
Target Start/End: Original strand, 3057367 - 3057470
Alignment:
Q  426 tttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctat 525  Q
    ||||||| ||||  ||||||||||||||| ||||  |||||||||||| || ||||||||||||||||| ||  ||||  |||||||||||| ||||| |    
T  3057367 tttcttccattttgagagataaagacacaaaaaagtttgaaaaaagtataaaataattaatgatgatggaactcactttgtggtaggatccatcatcttt 3057466  T
Q  526 tttt 529  Q
    ||||    
T  3057467 tttt 3057470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 419 - 470
Target Start/End: Original strand, 43309062 - 43309113
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaa 470  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  43309062 ttctccatttcttcaatttgaagagataaagacacataaaatcttgaaaaaa 43309113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 446 - 518
Target Start/End: Complemental strand, 28142881 - 28142807
Alignment:
Q  446 aaagacacataaaa-tcttgaaaaaa-gtaaaatataattaatgatgatgggacctacttattggtaggatccac 518  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||  ||||| |||||||||||||    
T  28142881 aaagacacataaaaatcttgaaaaaaagtaaaatataattaatgatggtgggactcacttaatggtaggatccac 28142807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 5e-42; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 35316768 - 35316879
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  35316768 tttctccatttcttcaatttggagagataaagacatataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggatcca 35316867  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  35316868 ccatctattttt 35316879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 28564834 - 28564946
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttg-aaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcc 516  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||| ||||| |||||||| ||    
T  28564834 tttctccatttcttcaatttggagagataaagacacataaaatcttttaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccc 28564933  T
Q  517 accatctattttt 529  Q
    |||||||||||||    
T  28564934 accatctattttt 28564946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 13238624 - 13238735
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||| |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||  |||||||| |||    
T  13238624 tttctcaatttcttcaatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtgggacccacttggtggtaggaccca 13238723  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  13238724 ccatctattttt 13238735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 418 - 498
Target Start/End: Original strand, 39465718 - 39465798
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacc 498  Q
    ||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39465718 tttctccattttttcaatttggagagataaaaacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacc 39465798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 23259619 - 23259508
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||| ||||||||||||||  || |||||||||| |||||||||| |||||||||||||||||||||||||| ||||| | ||||| | |||||| |||    
T  23259619 tttcttcatttcttcaattttgagggataaagacatataaaatcttaaaaaaagtaaaatataattaatgatggtgggatccacttagtagtaggaccca 23259520  T
Q  518 ccatctattttt 529  Q
    ||| ||||||||    
T  23259519 ccagctattttt 23259508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 398 - 498
Target Start/End: Complemental strand, 45625216 - 45625114
Alignment:
Q  398 gggttaggatcctctccatat--ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggg 495  Q
    |||||||||||||||| || |  |||||||||||||||||||| |||||||||||||| |||||||||||||||  ||||||| ||||||||||| ||||    
T  45625216 gggttaggatcctctcaatgtgtttctccatttcttcaatttagagagataaagacacgtaaaatcttgaaaaatataaaataaaattaatgatggtggg 45625117  T
Q  496 acc 498  Q
    |||    
T  45625116 acc 45625114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 418 - 489
Target Start/End: Complemental strand, 374570 - 374499
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgat 489  Q
    ||||||| ||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  374570 tttctccctttctttcatttagagagataaaaacacataaaatcttgaaaaaagtaaaatataattaatgat 374499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 418 - 489
Target Start/End: Complemental strand, 41983471 - 41983401
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgat 489  Q
    |||||||||||||| |||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41983471 tttctccatttctttaatttggagagataaagacacataaa-tcttgaaaaaagtaaaatataattaatgat 41983401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 420 - 480
Target Start/End: Original strand, 2061322 - 2061382
Alignment:
Q  420 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatata 480  Q
    |||| |||||||| ||||  |||||||||||| ||||||||||||||||||||||||||||    
T  2061322 tctcaatttcttccatttggagagataaagacgcataaaatcttgaaaaaagtaaaatata 2061382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 12949413 - 12949482
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatga 488  Q
    ||||||| ||||| | ||||  ||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  12949413 tttctccgtttctcctatttggagagataaagatacataaaatcttgaaaaaagtaaaa-ataattaatga 12949482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 530
Target Start/End: Complemental strand, 21454582 - 21454514
Alignment:
Q  462 ttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatttttg 530  Q
    ||||||||||||||| ||||||||||||| ||| ||| ||||| ||||| || |||| |||||||||||    
T  21454582 ttgaaaaaagtaaaaaataattaatgatggtggaacccacttaatggtatgacccacaatctatttttg 21454514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 15709772 - 15709821
Alignment:
Q  479 taattaatgatgatgggacctacttattggtaggatccaccatctatttt 528  Q
    |||||||||||||||| ||| ||||| ||||||||||||| |||||||||    
T  15709772 taattaatgatgatggaacccacttaatggtaggatccactatctatttt 15709821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 459
Target Start/End: Original strand, 374945 - 374987
Alignment:
Q  417 atttctccatttcttcaatttatagagataaagacacataaaa 459  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  374945 atttctccatttgttccatttagagagataaagacacataaaa 374987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 459
Target Start/End: Complemental strand, 3354886 - 3354844
Alignment:
Q  417 atttctccatttcttcaatttatagagataaagacacataaaa 459  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  3354886 atttctccatttgttctatttagagagataaagacacataaaa 3354844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 459
Target Start/End: Original strand, 8988808 - 8988850
Alignment:
Q  417 atttctccatttcttcaatttatagagataaagacacataaaa 459  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  8988808 atttctccatttgttccatttagagagataaagacacataaaa 8988850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 459
Target Start/End: Original strand, 29188605 - 29188647
Alignment:
Q  417 atttctccatttcttcaatttatagagataaagacacataaaa 459  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  29188605 atttctccatttgttccatttagagagataaagacacataaaa 29188647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 468
Target Start/End: Original strand, 30824122 - 30824171
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaa 468  Q
    |||||||||||||| ||||| ||||||| ||||||| |||||||| ||||    
T  30824122 ttctccatttcttccatttagagagatatagacacaaaaaatcttaaaaa 30824171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 468
Target Start/End: Complemental strand, 41073070 - 41073021
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaa 468  Q
    |||||||||||||  ||||| ||||||||||||||| |||||||| ||||    
T  41073070 ttctccatttctttcatttagagagataaagacacaaaaaatcttaaaaa 41073021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 418 - 527
Target Start/End: Original strand, 21151095 - 21151204
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||     
T  21151095 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggatcct 21151194  T
Q  518 ccatctattt 527  Q
    ||||||||||    
T  21151195 ccatctattt 21151204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 45260559 - 45260448
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  45260559 tttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaagtaaaatataattaatgatgatgggatccacttagtggtaggatcca 45260460  T
Q  518 ccatctattttt 529  Q
    | ||||||||||    
T  45260459 caatctattttt 45260448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 418 - 541
Target Start/End: Original strand, 16366461 - 16366584
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||  ||||| ||||||||||||    
T  16366461 tttctccatttcttcaatttggagagataaaaacacgtaaaatcttgaaaaaagtaaaatataattaatgatggtgggacacacttagtggtaggatcca 16366560  T
Q  518 ccatctatttttgatgtccatctc 541  Q
    |||||||||| | ||||| |||||    
T  16366561 ccatctatttcttatgtctatctc 16366584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 7362511 - 7362622
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||| ||||| || |||    
T  7362511 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtggaacccatttagtggtacgaccca 7362610  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  7362611 ccatctattttt 7362622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 9559186 - 9559075
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||| |||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  9559186 tttctcgatttcttccatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggaccca 9559087  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  9559086 ccatctattttt 9559075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 25084860 - 25084749
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||| || |||||  ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  25084860 tttctccatttttttaatttgaagagataaagacacataaaattttgaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggaccca 25084761  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  25084760 ccatctattttt 25084749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 4888410 - 4888521
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||| |||||||| ||||  |||||||||||||||||||||||| |||||  ||||||||||||||||||| ||||||||||||| |||||||| |||    
T  4888410 tttctcaatttcttccatttggagagataaagacacataaaatcttaaaaaacataaaatataattaatgatggtgggacctacttagtggtaggaccca 4888509  T
Q  518 ccatctattttt 529  Q
    | ||||||||||    
T  4888510 ctatctattttt 4888521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 18198199 - 18198310
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||||||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||||| ||||||  ||||| ||| || | |||    
T  18198199 tttctccatttcttcaatttgtagagataaaatcacataaaatcttgaaaaaaataaaatataattaatgatggtgggactcacttagtggcagaaccca 18198298  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  18198299 ccatctattttt 18198310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 12139271 - 12139381
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggga-cctacttattggtaggatcc 516  Q
    ||||||||||||||||||||  |||||||||  ||||||||||||| |||||||||||||||||||||||||| ||||| || ||||| |||||||| ||    
T  12139271 tttctccatttcttcaatttggagagataaa--cacataaaatcttaaaaaaagtaaaatataattaatgatggtgggaccccacttaatggtaggaccc 12139368  T
Q  517 accatctattttt 529  Q
    |||||||||||||    
T  12139369 accatctattttt 12139381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 44647908 - 44648018
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgg--gacctacttattggtaggatc 515  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||  ||  |||| ||||| |||| |||||    
T  44647908 tttctccatttcttcaattt---gagataaagacacataaaatcttgaaaaatgtaaaatataattaatgatggagggagacccacttagtggtcggatc 44648004  T
Q  516 caccatctattttt 529  Q
    ||||||||||||||    
T  44648005 caccatctattttt 44648018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 419 - 526
Target Start/End: Complemental strand, 47500414 - 47500307
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 518  Q
    |||||||||||| | ||||| ||||||| ||||||| ||||| ||||||||| ||||| ||||||||||||||||||||| ||||| |||| ||| ||||    
T  47500414 ttctccatttctaccatttagagagatatagacacacaaaattttgaaaaaaataaaaaataattaatgatgatgggacccacttagtggttggacccac 47500315  T
Q  519 catctatt 526  Q
    ||||||||    
T  47500314 catctatt 47500307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 418 - 521
Target Start/End: Complemental strand, 47226205 - 47226103
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| | ||| |||| ||| |||    
T  47226205 tttctctatttcttcaatttggagagataaa-acacataaaatcttggaaaaagtaaaatataattaatgatggtgggacccatttagtggtgggaccca 47226107  T
Q  518 ccat 521  Q
    ||||    
T  47226106 ccat 47226103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 419 - 526
Target Start/End: Original strand, 33450450 - 33450557
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 518  Q
    |||||||||||| | ||||  ||||||| | ||||| ||||| ||||||||| ||||| ||||||||||||||||||||| ||||| |||| ||| ||||    
T  33450450 ttctccatttctaccatttggagagatataaacacacaaaattttgaaaaaaataaaaaataattaatgatgatgggacccacttagtggttggacccac 33450549  T
Q  519 catctatt 526  Q
    ||||||||    
T  33450550 catctatt 33450557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 450 - 528
Target Start/End: Complemental strand, 39855913 - 39855835
Alignment:
Q  450 acacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatttt 528  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| | ||||||| ||||    
T  39855913 acacttaaaatcttgaaaaaagtaaaatttaattaatgatgatgggacccacttagtggtaggaccgaccatctttttt 39855835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 418 - 525
Target Start/End: Original strand, 29630991 - 29631098
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||  ||||  ||| ||||||||||||||||| ||||||||||||||  ||||||||||||  |||||||||| || |||| ||| |||    
T  29630991 tttctccatttctttcatttggagatataaagacacataaaattttgaaaaaagtaaagaataattaatgatagtgggacctacatagtggttggaccca 29631090  T
Q  518 ccatctat 525  Q
    | ||||||    
T  29631091 ctatctat 29631098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 529
Target Start/End: Original strand, 32915903 - 32916010
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 518  Q
    |||||||||||||| ||||  ||||||||||||||| ||||  || |||||   ||||||||||| |||||| ||||||  ||||| |||||||| ||||    
T  32915903 ttctccatttcttccatttggagagataaagacacaaaaaagttttaaaaa---aaaatataattcatgatggtgggactcacttaatggtaggacccac 32915999  T
Q  519 catctattttt 529  Q
     || |||||||    
T  32916000 tatttattttt 32916010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 40019646 - 40019703
Alignment:
Q  440 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggac 497  Q
    ||||||||| ||||| |||||||||||||||||| ||  |||||||||||| ||||||    
T  40019646 agagataaaaacacaaaaaatcttgaaaaaagtataaagtaattaatgatggtgggac 40019703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 459
Target Start/End: Complemental strand, 19889157 - 19889115
Alignment:
Q  417 atttctccatttcttcaatttatagagataaagacacataaaa 459  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  19889157 atttctccatttattccatttagagagataaagacacataaaa 19889115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 526
Target Start/End: Complemental strand, 34986077 - 34985970
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaag-taaaatataattaatgatgatgggacctacttattggtaggatcc 516  Q
    ||||||||||||| | ||||  ||||||| |||||  |||||| |||||||||  ||||| ||||||||||||||||||||  | ||| ||||  || ||    
T  34986077 tttctccatttctaccatttggagagatatagaca--taaaattttgaaaaaaaataaaaaataattaatgatgatgggactcatttagtggtttgaccc 34985980  T
Q  517 accatctatt 526  Q
    ||||||||||    
T  34985979 accatctatt 34985970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 487
Target Start/End: Complemental strand, 35265286 - 35265232
Alignment:
Q  434 atttatagagataaagacacataaaatcttgaa-aaaagtaaaatataattaatg 487  Q
    |||||| |||||||||||||| ||||||||||| ||||||| || ||||||||||    
T  35265286 atttattgagataaagacacaaaaaatcttgaaaaaaagtataaaataattaatg 35265232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 30588489 - 30588529
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaa 459  Q
    |||||||||| ||| ||||| ||||||||||||||||||||    
T  30588489 ttctccatttgttccatttagagagataaagacacataaaa 30588529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 422 - 529
Target Start/End: Complemental strand, 30426797 - 30426690
Alignment:
Q  422 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccat 521  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||||||    
T  30426797 tccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggacccaccat 30426698  T
Q  522 ctattttt 529  Q
    ||||||||    
T  30426697 ctattttt 30426690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 418 - 541
Target Start/End: Original strand, 36991299 - 36991422
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||| |||||||| |||    
T  36991299 tttctccatttcttcaatttggagagataaagacacgtaaaatcttgaaaaaagtcaaatataattaatgatggtgggacccacttagtggtaggaccca 36991398  T
Q  518 ccatctatttttgatgtccatctc 541  Q
     ||||||||| | ||||| |||||    
T  36991399 tcatctatttcttatgtctatctc 36991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 425 - 529
Target Start/End: Original strand, 28069669 - 28069773
Alignment:
Q  425 atttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatcta 524  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||    
T  28069669 atttcttccatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggacccaccatcta 28069768  T
Q  525 ttttt 529  Q
    |||||    
T  28069769 ttttt 28069773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 28319034 - 28318923
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||| ||||||||||||||| || |||||||||||||||||||||||||| | ||||| ||||| |||||||| |||    
T  28319034 tttctccatttcttcaatttggagagacaaagacacataaaattttaaaaaaagtaaaatataattaatgatggttggacccacttagtggtaggaccca 28318935  T
Q  518 ccatctattttt 529  Q
    | |||| |||||    
T  28318934 ctatcttttttt 28318923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 422 - 529
Target Start/End: Original strand, 41511209 - 41511316
Alignment:
Q  422 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccat 521  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | | ||||| || ||||| |||| ||    
T  41511209 tccatttcttcaatttggagagataaaaacacataaaatcttgaaaaaagtaaaatataattaatgatggtggaaaccacttagtgataggacccactat 41511308  T
Q  522 ctattttt 529  Q
    ||||||||    
T  41511309 ctattttt 41511316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 440 - 541
Target Start/End: Original strand, 24101981 - 24102082
Alignment:
Q  440 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatttttgatgtccatc 539  Q
    |||||||||||||| |||||||||||||||| | ||||||||||||||||| ||| ||  ||||| |||||||||||||||||||||||| ||||| |||    
T  24101981 agagataaagacacgtaaaatcttgaaaaaaatgaaatataattaatgatggtggaactcacttagtggtaggatccaccatctattttttatgtctatc 24102080  T
Q  540 tc 541  Q
    ||    
T  24102081 tc 24102082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 416 - 529
Target Start/End: Complemental strand, 40695381 - 40695268
Alignment:
Q  416 tatttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatc 515  Q
    ||||| ||||||||||||||||  || |||||||| |||||||||||||||||||||||||||||| |||||||| ||| ||  ||||| |||||||| |    
T  40695381 tatttatccatttcttcaatttggagggataaagaaacataaaatcttgaaaaaagtaaaatataactaatgatggtggaactcacttagtggtaggacc 40695282  T
Q  516 caccatctattttt 529  Q
     |||||||||||||    
T  40695281 taccatctattttt 40695268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 10672644 - 10672533
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||| ||||| ||||||||  ||||||||| | ||||||||| || ||||  |||||||||||||||||||| ||||||  ||||| ||||||||||||    
T  10672644 tttcttcatttattcaatttggagagataaaaatacataaaattttaaaaagggtaaaatataattaatgatggtgggactcacttagtggtaggatcca 10672545  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  10672544 ccatctattttt 10672533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 418 - 513
Target Start/End: Original strand, 8412197 - 8412292
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtagga 513  Q
    ||||| ||||| ||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||| |||| || || ||||||| ||||||||    
T  8412197 tttcttcattttttccatttagagagataaatacacataaaatattgaaaaaagtaaaatataattaacgatggtgagatctacttagtggtagga 8412292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 418 - 496
Target Start/End: Complemental strand, 12177696 - 12177618
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggga 496  Q
    ||||||||||||||||||||| |||||||| ||||  |||||||||||||||| |||||||||| |||||||| |||||    
T  12177696 tttctccatttcttcaatttaaagagataaggacaattaaaatcttgaaaaaaataaaatataactaatgatggtggga 12177618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 418 - 496
Target Start/End: Complemental strand, 12422124 - 12422046
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggga 496  Q
    ||||||||||||||||||||| |||||||| ||||  |||||||||||||||| |||||||||| |||||||| |||||    
T  12422124 tttctccatttcttcaatttaaagagataaggacaattaaaatcttgaaaaaaataaaatataactaatgatggtggga 12422046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 440 - 526
Target Start/End: Original strand, 45113235 - 45113321
Alignment:
Q  440 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatt 526  Q
    ||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||  ||||| |||| ||| ||||||||||||    
T  45113235 agagatatagacacataaaattttgaaaaaaataaaaaataattaatgatgatgggacacacttagtggttggacccaccatctatt 45113321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 426 - 529
Target Start/End: Complemental strand, 44859291 - 44859188
Alignment:
Q  426 tttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctat 525  Q
    |||||| |||||  |||||||||||||| | |||| ||  ||||| ||||||||||||||||||| ||||||| ||||| |||||| | |||||||||||    
T  44859291 tttctttaatttggagagataaagacacgtgaaattttttaaaaaataaaatataattaatgatggtgggacccacttagtggtagaacccaccatctat 44859192  T
Q  526 tttt 529  Q
    ||||    
T  44859191 tttt 44859188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 418 - 489
Target Start/End: Complemental strand, 27490138 - 27490067
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgat 489  Q
    |||||| |||||||| ||||  ||||| ||| | ||||||||||||||||||||||||||||||||||||||    
T  27490138 tttctcaatttcttccatttgaagagacaaaaatacataaaatcttgaaaaaagtaaaatataattaatgat 27490067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 10652750 - 10652638
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaa-gtaaaa-tataattaatgatgatgggacctacttattggtaggatc 515  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||| ||||||||| |||||| |||||||||||||| ||||||| | ||| | ||| || |    
T  10652750 tttcttcatttcttcaatttggagagataaa-acacataaaattttgaaaaaaagtaaaaatataattaatgatggtgggacccaattagtagtatgacc 10652652  T
Q  516 caccatctattttt 529  Q
    ||||||| ||||||    
T  10652651 caccatcaattttt 10652638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 487
Target Start/End: Complemental strand, 37966574 - 37966505
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatg 487  Q
    ||||||||||||||  ||||  ||||||||||| ||||||||  || |||||||||||||||||||||||    
T  37966574 tttctccatttcttttatttggagagataaagatacataaaaatttaaaaaaagtaaaatataattaatg 37966505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 528
Target Start/End: Original strand, 42761660 - 42761766
Alignment:
Q  420 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccacc 519  Q
    |||||||||||||||||   ||||||| |||| || ||||  ||| ||||| ||||| ||||||||||||||||| ||| ||| | |||||||||||||     
T  42761660 tctccatttcttcaattgg-agagatatagactcaaaaaaa-ttggaaaaattaaaaaataattaatgatgatggaacccactgagtggtaggatccact 42761757  T
Q  520 atctatttt 528  Q
    |||||||||    
T  42761758 atctatttt 42761766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 460
Target Start/End: Original strand, 5033049 - 5033091
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaat 460  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  5033049 tttctccatttcttcaatttggagagataaagacacataaaat 5033091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 18689495 - 18689544
Alignment:
Q  479 taattaatgatgatgggacctacttattggtaggatccaccatctatttt 528  Q
    |||||||||||||||| ||| ||||| ||||||||||||| |||||||||    
T  18689495 taattaatgatgatggaacccacttaatggtaggatccactatctatttt 18689544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 513
Target Start/End: Complemental strand, 24557266 - 24557218
Alignment:
Q  465 aaaaaagtaaaatataattaatgatgatgggacctacttattggtagga 513  Q
    ||||||||||||  |||||||||||||||||||  ||||| ||||||||    
T  24557266 aaaaaagtaaaaagtaattaatgatgatgggactcacttaatggtagga 24557218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 418 - 527
Target Start/End: Original strand, 27033594 - 27033703
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||| |||    
T  27033594 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggatccacttagtggtaggaccca 27033693  T
Q  518 ccatctattt 527  Q
    ||||||||||    
T  27033694 ccatctattt 27033703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 34373717 - 34373606
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  34373717 tttctccatttcttcaatttggagagataaagagacaaaaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 34373618  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  34373617 ccatctattttt 34373606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 34373774 - 34373885
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| |||    
T  34373774 tttcttcattttttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacctaattagtggtaggaccca 34373873  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  34373874 ccatctattttt 34373885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 422 - 529
Target Start/End: Complemental strand, 19830560 - 19830452
Alignment:
Q  422 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaag-taaaatataattaatgatgatgggacctacttattggtaggatccacca 520  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||| |||||||| ||||||    
T  19830560 tccatttcttcaatttggagagataaagacacataaaatctttaaaaaaggtaaaatataattaatgatggtgggacccacttaatggtaggacccacca 19830461  T
Q  521 tctattttt 529  Q
    |||||||||    
T  19830460 tctattttt 19830452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 43720079 - 43719968
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  43720079 tttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggaccca 43719980  T
Q  518 ccatctattttt 529  Q
    | || |||||||    
T  43719979 caatttattttt 43719968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 398 - 529
Target Start/End: Original strand, 40851690 - 40851828
Alignment:
Q  398 gggttaggatcctctccat------atttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatat-aattaatgatg 490  Q
    |||||||||||||||||||      |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  40851690 gggttaggatcctctccatttatgtatttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatatgatttaatgatg 40851789  T
Q  491 atgggacctacttattggtaggatccaccatctattttt 529  Q
     | ||||| ||||| |||| | | |||||||||||||||    
T  40851790 gtaggacccacttagtggttgaacccaccatctattttt 40851828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 550948 - 550837
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| || ||||||||||||||||| |||| ||| ||||||| ||||| || |||||||||    
T  550948 tttctccatttcttccatttggagagataaagatacataaaatttttaaaaaagtaaaatataaataataatggtgggacccacttaatgataggatcca 550849  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  550848 ccatctattttt 550837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 2229926 - 2230037
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||| ||||||| |||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | | ||||| |||||||| |||    
T  2229926 tttctctatttctttaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtggaaaccacttagtggtaggaccca 2230025  T
Q  518 ccatctattttt 529  Q
     |||||||||||    
T  2230026 tcatctattttt 2230037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 422 - 529
Target Start/End: Original strand, 46167340 - 46167447
Alignment:
Q  422 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccat 521  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||| ||| | ||| | ||||| |||||||| |||||||    
T  46167340 tccatttcttcaatttagagagataaagacaaatataatcttgaaaaaagtaaaatataattaataatggtaggatccacttagtggtaggacccaccat 46167439  T
Q  522 ctattttt 529  Q
     |||||||    
T  46167440 atattttt 46167447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 419 - 526
Target Start/End: Original strand, 48084763 - 48084870
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 518  Q
    |||||||||||| | ||||  ||||||| ||||||| ||||| ||||||||| ||||| ||||||||||||||||||||| ||||| |||| ||| ||||    
T  48084763 ttctccatttctaccatttggagagatatagacacacaaaattttgaaaaaaataaaaaataattaatgatgatgggacccacttagtggttggacccac 48084862  T
Q  519 catctatt 526  Q
    ||||||||    
T  48084863 catctatt 48084870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 440 - 529
Target Start/End: Original strand, 12402930 - 12403020
Alignment:
Q  440 agagataaagacacataaaatcttgaaaa-aagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctattttt 529  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||| ||| ||||||  ||||| |||||| |||||||||||| ||||    
T  12402930 agagataaagacacataaaatcttaaaaaaaagtaaaatataattaataatggtgggactcacttagtggtagaatccaccatctaatttt 12403020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 497
Target Start/End: Complemental strand, 36354393 - 36354316
Alignment:
Q  420 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggac 497  Q
    |||| ||||| |||||||| | ||||||||||||| ||||||||||||| |||| |  ||||||||||||||||||||    
T  36354393 tctcaatttcctcaatttagaaagataaagacacaaaaaatcttgaaaatagtatacaataattaatgatgatgggac 36354316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 425 - 529
Target Start/End: Complemental strand, 566898 - 566795
Alignment:
Q  425 atttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatcta 524  Q
    |||||||| ||||  ||||||||| | |||||||||||||||||| ||||||||||| |||| | | ||||||| ||||| || |||||||| |||| ||    
T  566898 atttcttccatttggagagataaaaatacataaaatcttgaaaaa-gtaaaatataaataataaaggtgggacccacttaatgataggatccgccatata 566800  T
Q  525 ttttt 529  Q
    |||||    
T  566799 ttttt 566795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 478 - 529
Target Start/End: Original strand, 35963361 - 35963412
Alignment:
Q  478 ataattaatgatgatgggacctacttattggtaggatccaccatctattttt 529  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||    
T  35963361 ataattaataatgatgggacctacttattggtaggatccactatctactttt 35963412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 496
Target Start/End: Original strand, 2310261 - 2310330
Alignment:
Q  425 atttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatggga 496  Q
    |||||||| ||||| |||||||||||||||  |||| || || ||||||||| |||||||||||||||||||    
T  2310261 atttcttccatttagagagataaagacaca--aaattttaaagaaagtaaaaaataattaatgatgatggga 2310330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 489
Target Start/End: Complemental strand, 52859513 - 52859441
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaa-agtaaaatataattaatgat 489  Q
    ||||||||||||| | ||||  ||| ||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  52859513 tttctccatttctaccatttggagaaataaatacacataaaatcttaaaaaagagtaaaatataattaatgat 52859441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 526
Target Start/End: Complemental strand, 40810441 - 40810380
Alignment:
Q  465 aaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatt 526  Q
    |||||| ||||| ||||||||||||||||||||| ||||| ||||  || ||||||||||||    
T  40810441 aaaaaaataaaaaataattaatgatgatgggacccacttagtggttagacccaccatctatt 40810380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 529
Target Start/End: Original strand, 42613032 - 42613134
Alignment:
Q  417 atttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcc 516  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||          ||||||| ||||||||||||| ||||||| ||||| || ||||| ||    
T  42613032 atttctccatttgttctatttagagagataaagacacataaaa----------agtaaaaaataattaatgatggtgggacccacttagtgataggaccc 42613121  T
Q  517 accatctattttt 529  Q
    ||||  |||||||    
T  42613122 accacttattttt 42613134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 470
Target Start/End: Original strand, 32577476 - 32577526
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaa 470  Q
    |||||||||||||| ||||  ||||||||||||||| |||||||||||||||    
T  32577476 ttctccatttcttctatttggagagataaagacaca-aaaatcttgaaaaaa 32577526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 459
Target Start/End: Original strand, 3009191 - 3009233
Alignment:
Q  417 atttctccatttcttcaatttatagagataaagacacataaaa 459  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  3009191 atttctccatttgttccatttagagagataaagacacataaaa 3009233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 459
Target Start/End: Complemental strand, 31523791 - 31523749
Alignment:
Q  417 atttctccatttcttcaatttatagagataaagacacataaaa 459  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  31523791 atttctccatttgttccatttagagagataaagacacataaaa 31523749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 528
Target Start/End: Complemental strand, 25285966 - 25285859
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 518  Q
    |||||||||||||| |||| |||||||||| ||||| |||||| | |||||||| ||| | |||| |||||| |||| |  | ||| || ||||||||||    
T  25285966 ttctccatttcttccatttgtagagataaaaacaca-aaaatc-taaaaaaagtcaaaaaaaattgatgatggtgggtctcatttaatgataggatccac 25285869  T
Q  519 catctatttt 528  Q
     |||||||||    
T  25285868 tatctatttt 25285859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 12151710 - 12151821
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |||    
T  12151710 tttctccatttattcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggaccca 12151809  T
Q  518 ccatctattttt 529  Q
    | ||||||||||    
T  12151810 caatctattttt 12151821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 12381042 - 12380931
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||| | |||    
T  12381042 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggactcacttagtggtagaaccca 12380943  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  12380942 ccatctattttt 12380931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 12385109 - 12384998
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||| | |||    
T  12385109 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggactcacttagtggtagaaccca 12385010  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  12385009 ccatctattttt 12384998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 50484329 - 50484440
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |||| | | |||    
T  50484329 tttctccatttctttaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgacggtgggacccacttagtggttgtaccca 50484428  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  50484429 ccatctattttt 50484440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 50294195 - 50294084
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||| |||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| | ||||| |||||||| |||    
T  50294195 tttctcaatttcttccatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtaggatccacttagtggtaggaccca 50294096  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  50294095 ccatctattttt 50294084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 422 - 497
Target Start/End: Complemental strand, 7841838 - 7841763
Alignment:
Q  422 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggac 497  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7841838 tccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggac 7841763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 418 - 498
Target Start/End: Original strand, 45977965 - 45978045
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacc 498  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||    
T  45977965 tttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaacgatgctgggacc 45978045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 23862088 - 23861973
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaa-aaaagtaaaatataattaatgatgatgggacctacttattggtaggat-- 514  Q
    |||||| |||||||||||||  | ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| | ||||| |||||||||      
T  23862088 tttctctatttcttcaatttggaaagataaagacacataaaatcttgaaaaaaaataaaatataattaatgatggtgggatccacttagtggtaggattc 23861989  T
Q  515 -ccaccatctattttt 529  Q
     |||||||||||||||    
T  23861988 accaccatctattttt 23861973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 530
Target Start/End: Original strand, 40328219 - 40328333
Alignment:
Q  418 tttctccatttcttcaatttatagagataaa-gacacataaaatcttgaaaa-aagtaaaatataattaatgatgatgggacctacttattggtaggatc 515  Q
    ||||| |||||||| |||||  ||||||||| |||||||||||||||||||| ||||||||||||| |||||||| ||| ||| ||||| |||| ||| |    
T  40328219 tttcttcatttctttaatttggagagataaaagacacataaaatcttgaaaaaaagtaaaatataactaatgatggtggaacccacttagtggtgggacc 40328318  T
Q  516 caccatctatttttg 530  Q
    |||||||||||||||    
T  40328319 caccatctatttttg 40328333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 422 - 529
Target Start/End: Original strand, 24977187 - 24977294
Alignment:
Q  422 tccatttcttcaatttatagagataaagacacataaaatcttgaaaaaag-taaaatataattaatgatgatgggacctacttattggtaggatccacca 520  Q
    ||||||||||  ||||| ||||||||| ||| |||||||||||||||||  |||||||||| |||||||  ||| ||| ||||| |||||||||||||||    
T  24977187 tccatttcttacatttagagagataaataca-ataaaatcttgaaaaaaaataaaatataactaatgattgtggaacccacttagtggtaggatccacca 24977285  T
Q  521 tctattttt 529  Q
    |||||||||    
T  24977286 tctattttt 24977294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 456 - 526
Target Start/End: Complemental strand, 18976398 - 18976329
Alignment:
Q  456 aaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatt 526  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  18976398 aaaattttgaaaaaaataaaa-ataattaatgatgatgggacctacttaatggttggatccaccatctatt 18976329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 5047510 - 5047403
Alignment:
Q  420 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccacc 519  Q
    ||||||||||||| ||||| |||||||||| |||| ||||  ||||||||| || || ||||||||||||| ||||||| || || ||||||||||||      
T  5047510 tctccatttcttccatttagagagataaaggcacaaaaaagtttgaaaaaa-tataaaataattaatgatggtgggacccacatagtggtaggatccatt 5047412  T
Q  520 atctatttt 528  Q
    |||||||||    
T  5047411 atctatttt 5047403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 418 - 500
Target Start/End: Original strand, 2845208 - 2845291
Alignment:
Q  418 tttctccatttct-tcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggaccta 500  Q
    |||||| |||||| |||||||  ||||||||| ||||| ||||| ||||||| ||||||||||||||||||||| |||||||||    
T  2845208 tttctctatttctatcaatttggagagataaatacacacaaaattttgaaaatagtaaaatataattaatgatggtgggaccta 2845291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 480 - 541
Target Start/End: Complemental strand, 32361377 - 32361316
Alignment:
Q  480 aattaatgatgatgggacctacttattggtaggatccaccatctatttttgatgtccatctc 541  Q
    ||||||||||||||||||||||||| | |||||||||||||||||| |||  ||||||||||    
T  32361377 aattaatgatgatgggacctacttagtagtaggatccaccatctatcttttgtgtccatctc 32361316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 493
Target Start/End: Original strand, 45970811 - 45970864
Alignment:
Q  440 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatg 493  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||    
T  45970811 agagataaagacacacaaaattttgaaaaaagtaaaaaataattaatgatgatg 45970864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 529
Target Start/End: Complemental strand, 48327279 - 48327175
Alignment:
Q  425 atttcttcaatttatagagataaagacacataaaatcttgaaaaaag-taaaatataattaatgatgatgggacctacttattggtaggatccaccatct 523  Q
    |||||||| ||||  ||| ||||||  |||||||||||||||||||  ||||||||||||||||||| | ||||| ||||| ||||||||  ||||||||    
T  48327279 atttcttccatttggagatataaaggtacataaaatcttgaaaaaaaataaaatataattaatgatggt-ggacccacttagtggtaggactcaccatct 48327181  T
Q  524 attttt 529  Q
    ||||||    
T  48327180 attttt 48327175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 421 - 518
Target Start/End: Complemental strand, 46608504 - 46608409
Alignment:
Q  421 ctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccac 518  Q
    |||||||||||| ||||  ||| |||||||||||  || | ||||||||||||||| ||||||||||||| |||| || ||||| |||||||| ||||    
T  46608504 ctccatttcttccatttggagaaataaagacaca--aagttttgaaaaaagtaaaaaataattaatgatggtgggtcccacttagtggtaggacccac 46608409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 483
Target Start/End: Original strand, 40988658 - 40988723
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataatt 483  Q
    ||||||||||| ||| ||||  ||||||||||||||| ||||| ||||||||||||||| ||||||    
T  40988658 tttctccattttttctatttggagagataaagacacacaaaattttgaaaaaagtaaaaaataatt 40988723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 541
Target Start/End: Original strand, 32618791 - 32618866
Alignment:
Q  465 aaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatttttgatgtccatctc 541  Q
    |||||| |||||  |||||||||||| ||||||||||||| | ||||||||||| |||||||| | |||||||||||    
T  32618791 aaaaaactaaaaagtaattaatgatggtgggacctacttaatagtaggatccactatctatttat-atgtccatctc 32618866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 524
Target Start/End: Complemental strand, 7783312 - 7783206
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||| |||||||||  |||| | |||||||||||| |||||| |  |||||| ||||||||||||||||||| ||  | | ||||| || |||||||||    
T  7783312 tttcttcatttcttccgtttaaaaagataaagacacgtaaaatttaaaaaaaattaaaatataattaatgatggtgcaatccacttaatgataggatcca 7783213  T
Q  518 ccatcta 524  Q
    | |||||    
T  7783212 caatcta 7783206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 32887910 - 32887802
Alignment:
Q  420 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccacc 519  Q
    ||||||||||||  ||||  ||||||| |||| || ||||  ||||||||| |  || ||||||||||||| ||||||| | ||| |||||||||||||     
T  32887910 tctccatttctttcatttggagagatatagactcaaaaaagtttgaaaaaaattgaaaataattaatgatggtgggacccatttaatggtaggatccact 32887811  T
Q  520 atctatttt 528  Q
    || ||||||    
T  32887810 atttatttt 32887802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 529
Target Start/End: Original strand, 7844939 - 7845042
Alignment:
Q  426 tttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctat 525  Q
    ||||||| ||||  ||||||||||| ||| | ||  |||||||||||| ||  |||||||| ||| ||||||  ||||| ||||||||||||  ||||||    
T  7844939 tttcttccatttgaagagataaagatacaaagaagtttgaaaaaagtataaactaattaataatggtgggacacacttagtggtaggatccaatatctat 7845038  T
Q  526 tttt 529  Q
    ||||    
T  7845039 tttt 7845042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 515
Target Start/End: Original strand, 26372218 - 26372292
Alignment:
Q  440 agagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatc 515  Q
    ||||||| |||| || ||||| ||| ||||||||||| |||||||||| || ||||||| ||||| ||||||||||    
T  26372218 agagatatagactcaaaaaat-ttggaaaaagtaaaaaataattaatggtggtgggacccacttaatggtaggatc 26372292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 470
Target Start/End: Complemental strand, 42720888 - 42720837
Alignment:
Q  419 ttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaa 470  Q
    |||||||||||||  ||||| ||||||||||||||||||| | |||||||||    
T  42720888 ttctccatttctttcatttagagagataaagacacataaagttttgaaaaaa 42720837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 490
Target Start/End: Complemental strand, 49384788 - 49384720
Alignment:
Q  420 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatg 490  Q
    |||||||||| || ||||| |||||||| ||||||  ||||||||||||||||| ||  ||||||||||||    
T  49384788 tctccatttcctccatttaaagagataaggacaca--aaatcttgaaaaaagtataaagtaattaatgatg 49384720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 541
Target Start/End: Complemental strand, 52280123 - 52280048
Alignment:
Q  466 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatttttgatgtccatctc 541  Q
    ||||||||||| ||||||||||||| ||||| | ||||| || ||||| ||||||  ||||||| ||||| |||||    
T  52280123 aaaaagtaaaaaataattaatgatggtgggatccacttagtgataggacccaccacttattttttatgtctatctc 52280048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 528
Target Start/End: Original strand, 39426201 - 39426263
Alignment:
Q  466 aaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccaccatctatttt 528  Q
    ||||||||||| ||||||||||||  ||||||| | ||| |||||||| |||| |||||||||    
T  39426201 aaaaagtaaaaaataattaatgatagtgggacccaattagtggtaggacccactatctatttt 39426263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 498
Target Start/End: Complemental strand, 1228618 - 1228582
Alignment:
Q  462 ttgaaaaaagtaaaatataattaatgatgatgggacc 498  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  1228618 ttgaaaaaagtaaaaaataattaatgttgatgggacc 1228582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 16529 - 16418
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||||||||||||||||||  |||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| |||    
T  16529 tttctccatttcttcaatttggagagataaaattacataaaatcttgaaaaaaataaaatataattaatgatgatgggacccacttagtggtaggaccca 16430  T
Q  518 ccatctattttt 529  Q
    |||| |||||||    
T  16429 ccatttattttt 16418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 418 - 498
Target Start/End: Complemental strand, 73972 - 73892
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacc 498  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  73972 tttctccatttcttcaatttagagagataaaaacacataaaatcttgaaaaaaataaaatataattaatgatgatgggacc 73892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 418 - 529
Target Start/End: Original strand, 7090 - 7201
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    ||||| ||||||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||| ||||| | |||||| |||    
T  7090 tttcttcatttcttcaatttgcagagataaagacatataaaatcttgaaaaaaataaaatataattaatgatggtggaacccacttaatagtaggaccca 7189  T
Q  518 ccatctattttt 529  Q
    ||||||||||||    
T  7190 ccatctattttt 7201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 420 - 498
Target Start/End: Original strand, 13641 - 13719
Alignment:
Q  420 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacc 498  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13641 tctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacc 13719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 420 - 529
Target Start/End: Complemental strand, 22572 - 22463
Alignment:
Q  420 tctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatccacc 519  Q
    ||||||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||  ||| ||  ||||| |||||||||||||     
T  22572 tctccatttcttacatttagagagataaatacacataaaatcttgaaaaaagtaaaatataattaattattgtggaactcacttagtggtaggatccact 22473  T
Q  520 atctattttt 529  Q
    ||||||||||    
T  22472 atctattttt 22463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 398 - 529
Target Start/End: Complemental strand, 6585 - 6456
Alignment:
Q  398 gggttaggatcctctccatatttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggac 497  Q
    ||||||||||||||||||| | | |   ||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||| | | ||    
T  6585 gggttaggatcctctccatttatgtg--tttcttcaattttgagagataaagacacataaaatcttggaaaaagtaaaatataattaatgatggttgtac 6488  T
Q  498 ctacttattggtaggatccaccatctattttt 529  Q
    | | ||| | |||||| |||||||||||||||    
T  6487 ccatttagttgtaggacccaccatctattttt 6456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 9330 - 9223
Alignment:
Q  418 tttctccatttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggacctacttattggtaggatcca 517  Q
    |||||| |||||||| ||||  |||||||||| ||||| ||||||| ||||||    |||||||||||||||| ||| | | ||||| |||| ||| |||    
T  9330 tttctcaatttcttccatttggagagataaaggcacatgaaatcttaaaaaaat---aatataattaatgatggtggaatccacttagtggttggaccca 9234  T
Q  518 ccatctatttt 528  Q
    |||||||||||    
T  9233 ccatctatttt 9223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 497
Target Start/End: Original strand, 5559 - 5632
Alignment:
Q  424 catttcttcaatttatagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatgatgggac 497  Q
    ||||||||| ||||  ||||||||||||| | | ||  |||||||||||| || ||||||||||||||||||||    
T  5559 catttcttccatttggagagataaagacataaagaagtttgaaaaaagtataaaataattaatgatgatgggac 5632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 528
Target Start/End: Original strand, 58684 - 58733
Alignment:
Q  479 taattaatgatgatgggacctacttattggtaggatccaccatctatttt 528  Q
    |||||||||||||||| ||| ||||| ||||||||||||| |||||||||    
T  58684 taattaatgatgatggaacccacttaatggtaggatccactatctatttt 58733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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