View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11831_low_9 (Length: 385)

Name: NF11831_low_9
Description: NF11831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11831_low_9
NF11831_low_9
[»] chr4 (5 HSPs)
chr4 (234-372)||(4472729-4472867)
chr4 (105-210)||(4472923-4473027)
chr4 (16-81)||(4473048-4473113)
chr4 (16-64)||(32564836-32564884)
chr4 (17-64)||(7209079-7209126)
[»] chr2 (2 HSPs)
chr2 (17-72)||(43939436-43939491)
chr2 (17-57)||(12457039-12457079)
[»] chr7 (1 HSPs)
chr7 (17-64)||(31448371-31448418)
[»] chr3 (3 HSPs)
chr3 (26-73)||(42380549-42380596)
chr3 (26-73)||(42409263-42409310)
chr3 (21-72)||(49006795-49006846)
[»] scaffold0001 (1 HSPs)
scaffold0001 (16-74)||(504588-504646)
[»] chr6 (2 HSPs)
chr6 (18-64)||(31144703-31144749)
chr6 (16-64)||(30416930-30416978)
[»] chr1 (2 HSPs)
chr1 (39-73)||(43325712-43325746)
chr1 (17-57)||(6951051-6951091)
[»] chr8 (1 HSPs)
chr8 (17-73)||(44086930-44086986)
[»] chr5 (1 HSPs)
chr5 (16-56)||(8564909-8564949)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 234 - 372
Target Start/End: Complemental strand, 4472867 - 4472729
Alignment:
Q  234 ctattttgatttctcaattttacttaaataaatgtttaattcaacttctgaattaaagattaactgttaaaaattaagagatcaaaactgtacaacatca 333  Q
    ||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4472867 ctattttgatttctcaattttacttaaacgaatgttcaattcaacttctgaattaaagattaacggttaaaaattaagagatcaaaactgtacaacatca 4472768  T
Q  334 atatgtgggtgtgaaccctatatataagtgtatctctgc 372  Q
    ||| |||||||||||||||||||||| ||||||||||||    
T  4472767 atacgtgggtgtgaaccctatatatatgtgtatctctgc 4472729  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 4473027 - 4472923
Alignment:
Q  105 caaactaacctgggaaatgtatgatatttgttttagatcaatgaaaatttatattttttcacataaaacttgtgaaatattatttttattaaacgatttg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4473027 caaactaacctgggaaatgtatgatatttgttttagatcaatgaaa-tttatattttttcacataaaacttgtgaaatattatttttattaaacgatttg 4472929  T
Q  205 ggattt 210  Q
    ||||||    
T  4472928 ggattt 4472923  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 4473113 - 4473048
Alignment:
Q  16 gtaagcacctttttattagaagcaaagagtgcttacatatagagacggatgaagtatatatatgtt 81  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||   ||||||||||||||    
T  4473113 gtaagcacctttttattagaggcaaagagtgcttacatatagggacggagagagtatatatatgtt 4473048  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 32564884 - 32564836
Alignment:
Q  16 gtaagcacctttttattagaagcaaagagtgcttacatatagagacgga 64  Q
    ||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  32564884 gtaagcacccttttattagaggcaaagagtgcttacatatagggacgga 32564836  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 7209079 - 7209126
Alignment:
Q  17 taagcacctttttattagaagcaaagagtgcttacatatagagacgga 64  Q
    ||||||| |||||||||||  |||||||||||||||||||| ||||||    
T  7209079 taagcacttttttattagagacaaagagtgcttacatatagggacgga 7209126  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 43939491 - 43939436
Alignment:
Q  17 taagcacctttttattagaagcaaagagtgcttacatatagagacggatgaagtat 72  Q
    |||||||| |||||||||| ||||| ||||||||||||||| |||||| |||||||    
T  43939491 taagcacccttttattagaggcaaatagtgcttacatatagggacggaggaagtat 43939436  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 12457039 - 12457079
Alignment:
Q  17 taagcacctttttattagaagcaaagagtgcttacatatag 57  Q
    |||||||| |||||||||| |||||| ||||||||||||||    
T  12457039 taagcacccttttattagaggcaaagggtgcttacatatag 12457079  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 31448418 - 31448371
Alignment:
Q  17 taagcacctttttattagaagcaaagagtgcttacatatagagacgga 64  Q
    |||||||| |||||||||| |||||| |||||||||||||| ||||||    
T  31448418 taagcacccttttattagatgcaaagggtgcttacatatagggacgga 31448371  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 42380596 - 42380549
Alignment:
Q  26 ttttattagaagcaaagagtgcttacatatagagacggatgaagtata 73  Q
    |||||||||| |||||| |||||||||||||| |||||||| ||||||    
T  42380596 ttttattagaggcaaagggtgcttacatatagggacggatggagtata 42380549  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 42409310 - 42409263
Alignment:
Q  26 ttttattagaagcaaagagtgcttacatatagagacggatgaagtata 73  Q
    |||||||||| |||||| |||||||||||||| |||||||| ||||||    
T  42409310 ttttattagaggcaaagggtgcttacatatagggacggatggagtata 42409263  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 49006795 - 49006846
Alignment:
Q  21 cacctttttattagaagcaaagagtgcttacatatagagacggatgaagtat 72  Q
    |||| ||||||||||  ||||||||||||| ||||||||||||| |||||||    
T  49006795 cacccttttattagagacaaagagtgcttatatatagagacggaggaagtat 49006846  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 504646 - 504588
Alignment:
Q  16 gtaagcacctttttattagaagcaaagagtgcttacatatagagacggatgaagtatat 74  Q
    ||||||||||||||||||||  ||||  |||||||||||||   |||||||||||||||    
T  504646 gtaagcacctttttattagagacaaaaggtgcttacatataagaacggatgaagtatat 504588  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 31144749 - 31144703
Alignment:
Q  18 aagcacctttttattagaagcaaagagtgcttacatatagagacgga 64  Q
    ||||||| |||||||||||| |||||||||||| |||||| ||||||    
T  31144749 aagcacccttttattagaaggaaagagtgcttatatatagggacgga 31144703  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 30416978 - 30416930
Alignment:
Q  16 gtaagcacctttttattagaagcaaagagtgcttacatatagagacgga 64  Q
    ||||||| | |||||||||| ||||||||| ||||||||||| ||||||    
T  30416978 gtaagcatccttttattagaggcaaagagttcttacatatagggacgga 30416930  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 43325712 - 43325746
Alignment:
Q  39 aaagagtgcttacatatagagacggatgaagtata 73  Q
    ||||||||||||||||||| |||||||||||||||    
T  43325712 aaagagtgcttacatatagggacggatgaagtata 43325746  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 6951091 - 6951051
Alignment:
Q  17 taagcacctttttattagaagcaaagagtgcttacatatag 57  Q
    |||||||| |||||||||| |||||| ||||||||||||||    
T  6951091 taagcacccttttattagaggcaaagtgtgcttacatatag 6951051  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 44086930 - 44086986
Alignment:
Q  17 taagcacctttttattagaagcaaagagtgcttacatatagagacggatgaagtata 73  Q
    ||||||| ||||||||||| |||||   | |||||||||||| ||||||||||||||    
T  44086930 taagcacatttttattagaggcaaacgatacttacatatagaaacggatgaagtata 44086986  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 8564949 - 8564909
Alignment:
Q  16 gtaagcacctttttattagaagcaaagagtgcttacatata 56  Q
    |||||||||||||||||||||| ||| | ||||||||||||    
T  8564949 gtaagcacctttttattagaagaaaaaaatgcttacatata 8564909  T

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