View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_high_17 (Length: 248)
Name: NF11832_high_17
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_high_17 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 47909672 - 47909437
Alignment:
| Q |
17 |
aagatacatataagtcaacaggttgctttgatcttacttgcaagggttttgtgcaaacaaataaggatgtagcgcttggtgctatcttagcacctatttc |
116 |
Q |
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| T |
47909672 |
aagatacatacaagtcaacaggttgctttgatcttacttgcaagggttttgtgcaaacaaataaggatgtagcgcttggtgctatcttagcacctatttc |
47909573 |
T |
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| Q |
117 |
aatcccttttggacaacaatatgaaataaacgttggaatatttcaggtaataatatgacacaaatatgcatgctctcactaatattatagtacatg---- |
212 |
Q |
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| T |
47909572 |
aatcccttttggacaacaatatgaaataaacgttggaatatttcaggtaataatatgacacaaatatgcatgctctcactaatattatactacatgatat |
47909473 |
T |
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| Q |
213 |
ataattgtaattttaatttctcttaatatgtttgtt |
248 |
Q |
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| T |
47909472 |
ataattgtaattttaatttctcttaatatgtttgtt |
47909437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 47919467 - 47919317
Alignment:
| Q |
17 |
aagatacatataagtcaacaggttgctttgatcttacttgcaagggttttgtgcaaacaaataaggatgtagcgcttggtgctatcttagcacctatttc |
116 |
Q |
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| T |
47919467 |
aagatacatacaagtcaacaggatgttttgatcttacttgcaagggttttgtgcaaacaaacaaggatatagcgcttggtgctaccctaggacctgtttc |
47919368 |
T |
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| Q |
117 |
aatcccttttggacaacaatatgaaataaacgttggaatatttcaggtaat |
167 |
Q |
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| T |
47919367 |
agtcccttctcaccaacaatatgaaatcaacgttggaatatttcgggtaat |
47919317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 47928585 - 47928432
Alignment:
| Q |
17 |
aagatacatataagtcaacaggttgctttgatcttacttgcaagggttttgtgcaaacaaataaggatgtagcgcttggtgctatcttagcacctatttc |
116 |
Q |
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| T |
47928585 |
aagatacatacaagtcaacaggctgctttgatcttacatgtcatggttttgtgcaaacaaacaagggtatagcccttggtgctaccctaggacctgtttc |
47928486 |
T |
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| Q |
117 |
aatcccttttggacaacaatatgaaataaacgttggaatatttcaggtaataat |
170 |
Q |
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| T |
47928485 |
atcccctcatcaacaacaatatgaaatcaatgttggaatatttcaggtaataat |
47928432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 47941107 - 47941063
Alignment:
| Q |
29 |
agtcaacaggttgctttgatcttacttgcaagggttttgtgcaaa |
73 |
Q |
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| T |
47941107 |
agtcaacaggttgctttgatcttacctgtagtggttttgtgcaaa |
47941063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 47947053 - 47947013
Alignment:
| Q |
130 |
caacaatatgaaataaacgttggaatatttcaggtaataat |
170 |
Q |
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| T |
47947053 |
caacaatatgaaatcaacgttggaatattttgggtaataat |
47947013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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