View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_high_2 (Length: 754)
Name: NF11832_high_2
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Original strand, 34771374 - 34771760
Alignment:
| Q |
17 |
caaaaccaagccatgtaaaggttagtttcatgtcaccatgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttactgttacttc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34771374 |
caaaaccaagccatgtaaaggttagtttcatgtcaccatgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttactgttacttc |
34771473 |
T |
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| Q |
117 |
cctctctatattgttacttcaacacacacacattcatatgcatattcacattcacactcttctgttttttgcttttgaactcttcaacttctaagaaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34771474 |
cctctctatattgttacttcaacacacacacattcatatgcatattcacattcacactcttctgttttttgcttttgaactcttcaacttctaagaaaaa |
34771573 |
T |
|
| Q |
217 |
tgtctaatatttgggatggttgttacctatttattattttcatcttcaatcaattcttacatttcattgttgatgnnnnnnnngttggaatgtgtttaga |
316 |
Q |
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| T |
34771574 |
tgtctaatatttgggatggttgttacctatttattattttcatcttcaatcaattcttacatttcattgttgatgttttttttgttggaatgtgtttaga |
34771673 |
T |
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| Q |
317 |
tttcatgatcatgttcatgttcatcatgttcatttcaaccatgctacatgttacattacatctttccaaacttgatagacttttacc |
403 |
Q |
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| T |
34771674 |
tttcatgatcatgttcatgttcatcatgttcatttcaaccatgctacatgttacattacatctttccaaacttgatagacttttacc |
34771760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 471 - 666
Target Start/End: Original strand, 34771828 - 34772023
Alignment:
| Q |
471 |
gagaatctgggatggttggttgttatgagttataattttgttaatcttattttgtttcagcttatgaaagggaaagacatgagatgacctgcttgtgcaa |
570 |
Q |
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| T |
34771828 |
gagaatctgggatggttggttgttatgagttataattttgttaatcttattttgtttcagcttatgaaagggaaagacatgagatgacctgcttgtgcaa |
34771927 |
T |
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| Q |
571 |
ttataatgatggatggtgcttgtcttgcaaagaaaatcatgaaaagccaaaaaagtcatggcagcaagaagagagggaagctggtgatgaagtagc |
666 |
Q |
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| T |
34771928 |
ttataatgatggatggtgcttgtcttgcaaagaaaatcatgaaaagccaaaaaagtcatggcagcaagaagagagggaagctggtgatgaagtagc |
34772023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 34781083 - 34781161
Alignment:
| Q |
158 |
atattcacattcacactcttctgtttt-ttgcttttgaactcttcaacttctaagaaaaatgtctaatatttgggatgg |
235 |
Q |
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| T |
34781083 |
atattcacatttacattcttctgtttttttgcttttgaactcttcaacttctgataaaaatgtctaatatttgggatgg |
34781161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 34780904 - 34780958
Alignment:
| Q |
54 |
atgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttact |
108 |
Q |
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| T |
34780904 |
atgtttcttaaaaatccatttatatctatttttgcatgatcctctttttcttact |
34780958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 34795752 - 34795806
Alignment:
| Q |
54 |
atgtttcttaaaaatccatttatatctatttttgcttgatcctctttttcttact |
108 |
Q |
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| T |
34795752 |
atgtttcttaaaaatccatttatatctatttttgcatgatcctctttttcttact |
34795806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 34780837 - 34780873
Alignment:
| Q |
17 |
caaaaccaagccatgtaaaggttagtttcatgtcacc |
53 |
Q |
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| T |
34780837 |
caaaaccaaaccatgtaaaggttagtttcatgtcacc |
34780873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 34795685 - 34795721
Alignment:
| Q |
17 |
caaaaccaagccatgtaaaggttagtttcatgtcacc |
53 |
Q |
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| T |
34795685 |
caaaaccaaaccatgtaaaggttagtttcatgtcacc |
34795721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 34795968 - 34796000
Alignment:
| Q |
140 |
acacacacattcatatgcatattcacattcaca |
172 |
Q |
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| T |
34795968 |
acacacacattcatatgcatattcacattcaca |
34796000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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