View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_high_4 (Length: 634)
Name: NF11832_high_4
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 19 - 617
Target Start/End: Complemental strand, 28749045 - 28748454
Alignment:
| Q |
19 |
taagtgtatcactgaaagctaaaatttaatttgaccaaatacctgtggatgggacaccagatctttgctagctttggctacatgtagtggaagatcataa |
118 |
Q |
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| T |
28749045 |
taagtgtatcactgaaagctaaaatttaatttgaccaaatacctgtggatgggacaccagatctttgctagctttggctacatgtagtggaagatcataa |
28748946 |
T |
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| Q |
119 |
gtagcacaagcttgggaggccacaatcacattttccagaggagaaaggaaaccacgatttctcgcagacaaaactgaacaggtaaaatccagcacgcata |
218 |
Q |
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| T |
28748945 |
gtagcacaagcttgggaggccacaatcacattttccagaggagaaaggaaaccacgatttctcgcagacaaaactgaacaggtaaaatccagcacgcata |
28748846 |
T |
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| Q |
219 |
tgtcagtgcatataccacaaaccaaaacctgtaacaagggaaaaccagcgcctcagaacctcagccaagaatctatgaactaaacaaaaaatgatatcaa |
318 |
Q |
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| T |
28748845 |
tgtcagtgcatatcccacaaaccaaaacctgtaacaagggaaaaccagcgcctcagaacctcagccaagaatctatgaactaaa-aaaaaatgatatcaa |
28748747 |
T |
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| Q |
319 |
taaagaatctctcagttgcggttgtggtcaaggttccactgcaagctttcatattgcagatgcagccaatgcggctgcaattgcggttactatgccatta |
418 |
Q |
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| T |
28748746 |
taaagaatctctcagttgcggttgtggtcaaggttccactgcaagctttcatattgcagatgcagccaatgcggctgcaattgcggttactatgccatta |
28748647 |
T |
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| Q |
419 |
tggtaaggcctttgtattgcagtcgcaattggcagacctcaatttagaactatggtctcaagattccagcaatcattagttgaggagacatataggaaag |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |
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| T |
28748646 |
tggtaaggcctttgtattgcagtcgcaattggcagacctcaatttagaactatggtctcaagattccaacaatcattagttggggagacatatagggaag |
28748547 |
T |
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| Q |
519 |
tgaaaacattaattttcacttggaaaaagtgtaaaaccaaaaccaaaacctatcgttatttatcatggttcagaagattttaatccttctcatttatag |
617 |
Q |
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| T |
28748546 |
tgaaaacattaattctcacttcgaaaaagtgt------aaaaccaaaacctatcgttatttatcatggttcagaagattttaatccttctcatttatag |
28748454 |
T |
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