View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_high_9 (Length: 419)
Name: NF11832_high_9
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 401
Target Start/End: Original strand, 24719137 - 24719529
Alignment:
| Q |
9 |
aatgagaaatggataaaagaaacgatttagtcctaaacttttaggtgtgagacaatctagactcttaaattaccgaaattctaaaatgacagaagaaatt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24719137 |
aatgagaaatggataaaagaaacgatttagtcctaaacttttaggtgtgagacaatctagactcttaaattaccgaaattctaaaatgacagaagaaatt |
24719236 |
T |
|
| Q |
109 |
gaaattccttgacaccgtaaggccnnnnnnnatcgatcaagctagtcactgatatcaaatatgaccgagaattttgaattccagggatatatcaaaattt |
208 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24719237 |
gaaattccttgacaccgtaaggcctttttttatcgatcaagctagtcactgatatcaaatatgaccgagaattttgaatttcagggatatatcaaaattt |
24719336 |
T |
|
| Q |
209 |
ccttagttgcaggacaaaacttcctaatcccttgccattttgtgaaatccgtattggttttttcaaggtgcatggacttggaccgcgtattattctaata |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24719337 |
tcttagttgcaggacaaaacttcctaatcccttgccattttgtgaaatccgtattggttttttcaaggtgcatggacttggaccgcgtattagtctaata |
24719436 |
T |
|
| Q |
309 |
cactaatagcatggaaaactaagacaaatgatatgtgagaaaactaataacactagtgttcttgtagagataaagggtatatattatcacacc |
401 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24719437 |
aactaatagcatggaaaactaagactaatgatatgtgagaaaactaataacactagtgttcttgtagagataaagggtatatattatcacacc |
24719529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 140 - 401
Target Start/End: Original strand, 24677837 - 24678098
Alignment:
| Q |
140 |
atcgatcaagctagtcactgatatcaaatatgaccgagaattttgaattccagggatatatcaaaatttccttagttgcaggacaaaacttcctaatccc |
239 |
Q |
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| T |
24677837 |
atcgatcaacctagtcaccgatatctaatatgaccgagaattttgaatttcagggatatatcaaaattttgttagctggaggataaaacttcccaatccc |
24677936 |
T |
|
| Q |
240 |
ttgccattttgtgaaatccgtattggttttttcaaggtgcatggacttggaccgcgtattattctaatacactaatagcatggaaaactaagacaaatga |
339 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||| | |||| ||||| |
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| T |
24677937 |
ttgccattttttgaaatccgtattggtttttacaaggcgcatgaacttggacggcgtattagtctaatacactaatagcatggaaaattgagactaatga |
24678036 |
T |
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| Q |
340 |
tatgtgagaaaactaataacactagtgttcttgtagagataaagggtatatattatcacacc |
401 |
Q |
| |
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||||||| ||||||||| |||| |||||||||||| |||||| ||||||||||||||||||| |
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| T |
24678037 |
tatgtgaaaaaactaatgacacaagtgttcttgtacagataaggggtatatattatcacacc |
24678098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 33 - 300
Target Start/End: Original strand, 24686433 - 24686699
Alignment:
| Q |
33 |
atttagtcctaaacttttaggtgtgagacaa-tctagactcttaaattaccgaaattctaaaatgacagaagaaattgaaattccttgacaccgtaaggc |
131 |
Q |
| |
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||||||||||||| || ||||| | |||||| |||| ||||||||||||||||| | ||||||||||||| ||||| || || | ||| | || ||| |
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| T |
24686433 |
atttagtcctaaatttgtaggtttcagacaaatctaatctcttaaattaccgaaactaaaaaatgacagaagtaattggaaatcatcaacagcatatggc |
24686532 |
T |
|
| Q |
132 |
cnnnnnnnatcgatcaagctagtcactgatatcaaatatgaccgagaattttgaattccagggatatatcaaaatttccttagttgcaggacaaaacttc |
231 |
Q |
| |
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| ||||||||| ||||||||||||||| ||||||| |||||||||| ||||||| |||||||| |||||| ||||||||||||||||||| | |
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| T |
24686533 |
cttttgg-atcgatcaatctagtcactgatatctaatatgatcgagaattttcaattccaaggatatattgaaattttgttagttgcaggacaaaactcc |
24686631 |
T |
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| Q |
232 |
ctaatcccttgccattttgtgaaatccgtattggttttttcaaggtgcatggacttggaccgcgtatta |
300 |
Q |
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|||||||| |||||||||||||| |||||||||||| |||||||| ||| |||||| ||||||||| |
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| T |
24686632 |
gcaatcccttctcattttgtgaaatcagtattggtttttgcaaggtgcctgg-cttggatcgcgtatta |
24686699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 287
Target Start/End: Original strand, 24675824 - 24675966
Alignment:
| Q |
145 |
tcaagctagtcactgatatcaaatatgaccgagaattttgaattccagggatatatcaaaatttccttagttgcaggacaaaacttcctaatcccttgcc |
244 |
Q |
| |
|
|||| ||||||| ||||||| ||||||| |||| ||||| ||| ||||||||| || |||||| |||||||||||||||| |||||| |||||||||| |
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| T |
24675824 |
tcaatctagtcattgatatctaatatgatcgagcattttttatttcagggatatgtcgaaattttgttagttgcaggacaaatcttccttatcccttgcc |
24675923 |
T |
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| Q |
245 |
attttgtgaaatccgtattggttttttcaaggtgcatggactt |
287 |
Q |
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| |||||||||| | ||||||||||| | |||||||||||||| |
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| T |
24675924 |
aatttgtgaaattcatattggtttttacgaggtgcatggactt |
24675966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 269
Target Start/End: Original strand, 24640751 - 24640845
Alignment:
| Q |
175 |
gagaattttgaattccagggatatatcaaaatttccttagttgcaggacaaaacttcctaatcccttgccattttgtgaaatccgtattggtttt |
269 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
24640751 |
gagaatttttaatttcagggatatatcaaaattttgttaattgcaggacaaatcttcctaatcccttgccatttcgtgaaatccatattggtttt |
24640845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 307
Target Start/End: Original strand, 24714101 - 24714257
Alignment:
| Q |
150 |
ctagtcactgatatcaaatatgaccgagaattttgaattccagggatatatcaaaatttccttagttgcaggacaaaacttcctaatcccttgccatttt |
249 |
Q |
| |
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||||||||||||||| ||||||| ||||||||| ||| |||| ||||||| | || | ||||||||| ||||| ||||||||| ||||| |||||| |
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| T |
24714101 |
ctagtcactgatatctaatatgattgagaattttcaatatcaggtatatatcgacatgttgatagttgcagaacaaa-cttcctaattccttgtcatttt |
24714199 |
T |
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| Q |
250 |
gtgaaatccgtattggttttttcaaggtgcatggacttggaccgcgtattattctaat |
307 |
Q |
| |
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|||||||| ||||||||||| |||||| ||||||| | || ||| ||||| |||||| |
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| T |
24714200 |
atgaaatccttattggtttttacaaggtacatggacattgatcgcatattagtctaat |
24714257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 24675693 - 24675769
Alignment:
| Q |
22 |
taaaagaaacgatttagtcctaaacttttaggtgtgagacaa-tctagactcttaaattaccgaaattctaaaatga |
97 |
Q |
| |
|
|||||| || |||||||||||||| || ||||| | |||||| ||||| |||||||||||||||||||| ||||||| |
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|
| T |
24675693 |
taaaaggaatgatttagtcctaaaattgtaggtttcagacaaatctagtctcttaaattaccgaaattcaaaaatga |
24675769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 287
Target Start/End: Original strand, 24691938 - 24692075
Alignment:
| Q |
140 |
atcgatcaagctagtcactgatatcaaatatgaccgagaattttgaattccagggatatatcaaaatttccttagttgcaggacaaaacttcctaatccc |
239 |
Q |
| |
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|||| |||| ||||||| |||||| |||||| |||||||||| |||| ||||||||||| ||||||| | | |||||||||| |||||| |
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| T |
24691938 |
atcggtcaatctagtcatcgatatctaatatggtcgagaatttttaatttcagggatatattaaaattttgtcaattgcaggaca---------aatccc |
24692028 |
T |
|
| Q |
240 |
ttgccattttgtgaaatccgtattggttttttcaaggtgcatggactt |
287 |
Q |
| |
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||||||||| ||||||||| |||||| |||| | |||||||||||||| |
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|
| T |
24692029 |
ttgccatttcgtgaaatccatattgg-ttttacgaggtgcatggactt |
24692075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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