View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_low_10 (Length: 415)
Name: NF11832_low_10
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 186 - 385
Target Start/End: Original strand, 5504931 - 5505131
Alignment:
| Q |
186 |
gttccggtatccactttttagtccctagaagtatacgattttgtaatatgtagagacttaaaagtgggtacaaggaccnnnnnnnnn-tttaatataact |
284 |
Q |
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| T |
5504931 |
gttccggtatccactttttagtccctagaagtatacgattttgtaatttgtagagacttaaaagtgggtacaaggaccaaaaaaaaaatttaatataact |
5505030 |
T |
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| Q |
285 |
atactgactaaaaatatatttaaccctaaaatctaattacacaagttatgatacagattacaaaatttgcatatgaataatgtatttatgtttgcacagg |
384 |
Q |
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| T |
5505031 |
atactgactaaaaatatatttaaccctaaaatctaattacacaagttatgatacagattacaaaatttgcatatgaataatgtatttatgtttgtacagg |
5505130 |
T |
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| Q |
385 |
t |
385 |
Q |
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| T |
5505131 |
t |
5505131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 5504761 - 5504872
Alignment:
| Q |
16 |
ggttcaacgtttactgaatcaccaggaacagatcctcaagccactgtgatgatgatgggaaggtatgcataatgcatgcatgaattatattcataaaact |
115 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5504761 |
ggttcaacgtttactgaatcaccaggaacaaatcctcaagccactgtgatgatgatgggaaggtatgcataatgcatgcatgaattatattcataaaact |
5504860 |
T |
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| Q |
116 |
gataaacatgtg |
127 |
Q |
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| T |
5504861 |
gataaacatgtg |
5504872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 42959971 - 42959908
Alignment:
| Q |
19 |
tcaacgtttactgaatcaccaggaacagatcctcaagccactgtgatgatgatgggaaggtatg |
82 |
Q |
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| T |
42959971 |
tcaacatttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatgggcaggtatg |
42959908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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