View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_low_11 (Length: 365)
Name: NF11832_low_11
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 1217078 - 1217437
Alignment:
| Q |
1 |
tcttattttctgcttatgtgtatatcactagagaaattctcatgtgttttaaagctcaaaaactcacctgaagaagatgccgttaagttgcatcctggat |
100 |
Q |
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| T |
1217078 |
tcttattttctgcttatgtgtatatcactagagaaattctcatgtgttttaaagctcaaaaactcacctgaagaagatgccgttaagttgcatcctggat |
1217177 |
T |
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| Q |
101 |
ctcgtgacgctcatacgctgtaagttcnnnnnnnnnnnnnnnnnnnnaatctttcaacattatgctggttgaatttttctgactacctttacagttttcc |
200 |
Q |
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| T |
1217178 |
ctcgtgacgctcatacgctgcaagttcttttctttttgtagttttttaatctttcaacattatgctggttgaatttttctgactacctttacagttttcc |
1217277 |
T |
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| Q |
201 |
agatagtc---------atttgatcgtggaaattcgagattccaagggagagaattttggccgtgttattgtccaagtggctaatatatctggtgatggg |
291 |
Q |
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| T |
1217278 |
agatagtcacagagattatttgatcgtggaaattcgagattccaagggagagaattttggccgtgttattgtccaagtggctgatatatctggtgatggg |
1217377 |
T |
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| Q |
292 |
gta----atatttttatgacaatatttttagggagttattaatgcctgtcatgacgagtg |
347 |
Q |
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| T |
1217378 |
gtaatatatatttttatgacaatatttttagggagttattaatgcctgtcatgacgagtg |
1217437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 304
Target Start/End: Original strand, 27745375 - 27745534
Alignment:
| Q |
158 |
cattatgctggttgaattt-ttctgactacc---tttacagttttccagatagtc---------atttgatcgtggaaattcgagattccaagggagaga |
244 |
Q |
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| T |
27745375 |
cattatgctggttgaatatattctgactactacatttacagttttccagatagtcttggagatgatttgctcattgaagttcaagattccaagggaaagc |
27745474 |
T |
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| Q |
245 |
attttggccgtgttattgtccaagtggctaatatatctggtgatggggtaatatttttat |
304 |
Q |
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| T |
27745475 |
attttgggcgtgttcttgtccaagtggctgctatagctgataatccggtaatatttttat |
27745534 |
T |
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