View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_low_13 (Length: 329)
Name: NF11832_low_13
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_low_13 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 29312494 - 29312191
Alignment:
| Q |
16 |
aatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312494 |
aatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagaca |
29312395 |
T |
|
| Q |
116 |
tatacttaatggcattgtgacaatcaccacatattctcaaattcttataaaccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312394 |
tatacttaatggcattgtgacaatcaccacatattctcaaattcttataaaccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgca |
29312295 |
T |
|
| Q |
216 |
agcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttattt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312294 |
agcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttattt |
29312195 |
T |
|
| Q |
316 |
catc |
319 |
Q |
| |
|
|||| |
|
|
| T |
29312194 |
catc |
29312191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 34635372 - 34635670
Alignment:
| Q |
16 |
aatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagaca |
115 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||| ||| || |||||||| ||||| ||||||||||| || |
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| T |
34635372 |
aatagtcaccataaatcattacatgaacaatttccatttttgaagtgatgaaacctgaaggagtctctgacaacaatcatcacatcaacaaccttagcca |
34635471 |
T |
|
| Q |
116 |
tatacttaatggcattgtgacaatcaccacatattctcaaattcttataaac-catatcatcgactgtccattcaaattaagtatcccgaatgcaaccgc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||||| |||||||||||||||||||| |||||||| || |
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|
| T |
34635472 |
tatacttaatggcattgtgacaatcaccacatattctcaaattcttaaaaactcgtatcgtcgactgcccattcaaattaagtatcccaaatgcaacggc |
34635571 |
T |
|
| Q |
215 |
aagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttatt |
314 |
Q |
| |
|
||||||||||||||| | | ||||| ||||| ||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||| |||||||| |
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| T |
34635572 |
aagcttctcactatgcttacaaagactctcaactttttcctcttgatcaatatcatgcagaacattatcagtgtc--gcttatatccagccgcttttatt |
34635669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 29054534 - 29054828
Alignment:
| Q |
16 |
aatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagaca |
115 |
Q |
| |
|
|||| ||||||||| || |||||||||||| || ||||||||||||||||||||||||||| ||| |||||| ||||||||| | |||||| ||||||| |
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|
| T |
29054534 |
aataatcaccataagtctttacaagaacaacttccatttttgaagtgataaaacctcaaggagtctctaacagtaataatcacacaaacaactttagaca |
29054633 |
T |
|
| Q |
116 |
tatacttaatggcattgtgacaatcaccacatattctcaaattcttataaaccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgca |
215 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||||||||||||||||||||||| |||||||| ||| |
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| T |
29054634 |
tatactaaatggcattgtgacaatcaccacatattctcaaatttttaaaaaccgcattgtcgactgtccattcaaattaagtatcccaaatgcaacagca |
29054733 |
T |
|
| Q |
216 |
agcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccactttta |
312 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||||||| || ||||||| |||||||| ||||| ||||| ||||||||| |||||||||| |
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| T |
29054734 |
agcttctcactatggttacaaagattctcagttttttcctct--attaatatcaccaagaacataatcagtgtcagccttatatccggccactttta |
29054828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 13792263 - 13792563
Alignment:
| Q |
16 |
aatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagaca |
115 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||| || || ||||| |||| | |||||| || |||| |
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|
| T |
13792263 |
aataatcaccaaaaatctttacaagaacaatttccatttttgaagtgatgaaacctcaaggagtctctgacgacaatcgtcacaccaacaacattggaca |
13792362 |
T |
|
| Q |
116 |
tatacttaatggcattgtgacaatcaccacatattctcaaattcttataaacca-tatcatcgactgtccattcaaattaagtatcccgaatgcaaccgc |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |||||||| || |
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|
| T |
13792363 |
tatacttaatggcattatgacaatcaccacatattctcaaattcttaaaaacccgtatcgtcgactgtccattcaaattaagtatcccaaatgcaacagc |
13792462 |
T |
|
| Q |
215 |
aagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttatt |
314 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||||| |
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|
| T |
13792463 |
aagcttctcactatggttacaaagactctcagctttttcctcttgatcaatatcatgcagaacataatcagtgtcaggcttatatccagccgcttttatt |
13792562 |
T |
|
| Q |
315 |
t |
315 |
Q |
| |
|
| |
|
|
| T |
13792563 |
t |
13792563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 28743979 - 28743679
Alignment:
| Q |
16 |
aatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagaca |
115 |
Q |
| |
|
|||| ||||||||| || ||||||||||||||| ||||||||||||||| ||||||||||| ||| || |||||||| || || | ||||||||||||| |
|
|
| T |
28743979 |
aataatcaccataagtctttacaagaacaatttccatttttgaagtgatgaaacctcaaggagtctctgacaacaattataacaccgacaaccttagaca |
28743880 |
T |
|
| Q |
116 |
tatacttaatggcattgtgacaatcaccacatattctcaaattcttataaa-ccatatcatcgactgtccattcaaattaagtatcccgaatgcaaccgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
28743879 |
tatacttaatggcattgtgacaatcaccgcatattctcaaattcttaaaaacccgtattgtcgactgtccattcaaattaagtatcccaaaggcaacagc |
28743780 |
T |
|
| Q |
215 |
aagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttatt |
314 |
Q |
| |
|
||||||||||||||||| | | ||| |||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||||||| ||| ||| |
|
|
| T |
28743779 |
aagcttctcactatggttacagagactctcagctttttcctcttgatcaatatcttgcagaacataatcagtgtcaggcttatatccagccattttcatt |
28743680 |
T |
|
| Q |
315 |
t |
315 |
Q |
| |
|
| |
|
|
| T |
28743679 |
t |
28743679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 4542 - 4244
Alignment:
| Q |
16 |
aatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagaca |
115 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| ||||||||||||||| |||||| |||| ||| || |||||||| ||||| ||||||||||| || |
|
|
| T |
4542 |
aatagtcaccataaatcattacatgaacaatttccatttttgaagtgatgaaacctgaaggagtctctgacaacaatcatcacatcaacaaccttagcca |
4443 |
T |
|
| Q |
116 |
tatacttaatggcattgtgacaatcaccacatattctcaaattcttataaac-catatcatcgactgtccattcaaattaagtatcccgaatgcaaccgc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||||| |||||||||||||||||||| |||||||| || |
|
|
| T |
4442 |
tatacttaatggcattgtgacaatcaccacatattctcaaattcttaaaaactcgtatcgtcgactgcccattcaaattaagtatcccaaatgcaacggc |
4343 |
T |
|
| Q |
215 |
aagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatccagccacttttatt |
314 |
Q |
| |
|
||||||||||||||| | | ||||| ||||| ||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||| |||||||| |
|
|
| T |
4342 |
aagcttctcactatgcttacaaagactctcaactttttcctcttgatcaatatcatgcagaacattatcagtgtc--gcttatatccagccgcttttatt |
4245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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