View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_low_14 (Length: 321)
Name: NF11832_low_14
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 3215292 - 3215040
Alignment:
| Q |
1 |
tctatcaagtgggtttctggaaagtataccgttagaatccctatatctgttatttttgtgtgaaaatttggcaaaagaaattaatcatagcatgatacta |
100 |
Q |
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| T |
3215292 |
tctatcaagtgggtttctggaaagtataccgttagaatccctatatctgtcatttttgtgtgaaaatttggcaaaagaaattaatcatagcatgatacta |
3215193 |
T |
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| Q |
101 |
ttatattaaggaataaatgtaagtattgaagagtatgaaaacgtgcattgtaatcttcgagcttacttcaatgaaatttaagccaaactctcttaatagt |
200 |
Q |
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| T |
3215192 |
ttatattaaggaataaatgtaagtattgaagagtatgaaaacgtgcattgtaatcttcgagcttacttcaatgaaatttaagccaaactctcttaatagt |
3215093 |
T |
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| Q |
201 |
tacaatgaaattatgggtcttacgtaatttaaatcctttggtaatctcctttg |
253 |
Q |
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| T |
3215092 |
tacaatgaaattatgggtcttacgtaatttaaatcctttggtaatctcctttg |
3215040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 3201382 - 3201265
Alignment:
| Q |
1 |
tctatcaagtgggtttctggaaagtataccgttagaatccctatatctgttatttttgtgtgaaaatttggcaaaagaaattaatcatagcatgatacta |
100 |
Q |
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|||||||||||| |||||| ||||||| | ||||| || ||||| |||| | ||||||||||||| |||||||| |||||||| | ||||||| | || |
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| T |
3201382 |
tctatcaagtggatttctgcaaagtattctgttagcattcctattgctgtcgtatttgtgtgaaaatgtggcaaaataaattaattagagcatgacatta |
3201283 |
T |
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| Q |
101 |
ttatattaaggaataaat |
118 |
Q |
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|||| ||||||||||||| |
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| T |
3201282 |
ttatgttaaggaataaat |
3201265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 3219184 - 3219239
Alignment:
| Q |
250 |
tttgctgtctaaaggttgacatatccagcaaaagtggcaaataaatcatctggttt |
305 |
Q |
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|||||| || || ||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
3219184 |
tttgctttcaaatggttgacatatccagcaccagtggcaaataaatcagctggttt |
3219239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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