View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_low_15 (Length: 286)
Name: NF11832_low_15
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 7509053 - 7508787
Alignment:
| Q |
1 |
aaaggaaataatgtccaaataccaaactagcttgaaaaagttgcacaaagcatcataaaataaacaggaaacaagagagcatccatagttatcaatagtt |
100 |
Q |
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| T |
7509053 |
aaaggaaataatgtccaaataccaaactagcttgaaaaagttgcacaaagcatcataaaataaacaggaaacaagagagcatccatagttatcaatagtt |
7508954 |
T |
|
| Q |
101 |
atcataaactttgaagtattttgtttttgctaattgataagtaagttaattttcaatcctttattttgttgctttagtcacaattgttgcacccgaaata |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7508953 |
atcataaactttgaaatattttgtttttgctaattgataagtaagttaattttcaatcctttattttgttcctttagtcacaattgttgcacccgaaata |
7508854 |
T |
|
| Q |
201 |
tatatcatacgcattttgttttattatttctagaagatactagaagagaagtagcaaagttaaaacat |
268 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7508853 |
tatatcatacacattttg-tttattatttctagaagatactagaagagaagtagcaaagttaaaacat |
7508787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 45 - 268
Target Start/End: Complemental strand, 25003699 - 25003476
Alignment:
| Q |
45 |
acaaagcatcataaaataaacaggaaacaagagagcatccatagttatcaatagttatcataaactttgaagtattttgtttttgctaattgataagtaa |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25003699 |
acaaagcatcataaaataaacaggaaacaagagagcatccatagttatcaatagttatcataaactttgaagtattttgtttttgctaattgataagtaa |
25003600 |
T |
|
| Q |
145 |
gttaattttcaatcctttattttgttgctttagtcacaattgttgcacccgaaatatatatcatacgcattttgttttattatttctagaagatactaga |
244 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25003599 |
gttaattttcaatcctttattttgttcctttagtcacaattgttgcacccgaaatatatatcatacgcattttgttttattatttctagaagatactaga |
25003500 |
T |
|
| Q |
245 |
agagaagtagcaaagttaaaacat |
268 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
25003499 |
agagaagtagcaaagttaaaacat |
25003476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 45 - 268
Target Start/End: Complemental strand, 16473833 - 16473610
Alignment:
| Q |
45 |
acaaagcatcataaaataaacaggaaacaagagagcatccatagttatcaatagttatcataaactttgaagtattttgtttttgctaattgataagtaa |
144 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16473833 |
acaaagcatcataaaataaacaggaaacaagagagcatccatagttatcaatagttatcataaactttgaagtattttgtttttgctaattgataagtaa |
16473734 |
T |
|
| Q |
145 |
gttaattttcaatcctttattttgttgctttagtcacaattgttgcacccgaaatatatatcatacgcattttgttttattatttctagaagatactaga |
244 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16473733 |
gttaattttcaatcctttattttgttcctttagtcacaattgttgcacccgaaatatatatcatacgcattttgttttattatttctagaagatactaga |
16473634 |
T |
|
| Q |
245 |
agagaagtagcaaagttaaaacat |
268 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
16473633 |
agagaagtagcaaagttaaaacat |
16473610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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