View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_low_16 (Length: 258)
Name: NF11832_low_16
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 3215733 - 3215493
Alignment:
| Q |
17 |
aaaccagctgatttatttgccactggtgctggacatgtcaacccttcgaaagcaaacgatccaggacttgtttatgatattgaaccaaatgattatgttc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215733 |
aaaccagctgatttatttgccactggtgctggacatgtcaacccttcgaaagcaaacgatccaggacttgtttatgatattgaaccaaatgattatgttc |
3215634 |
T |
|
| Q |
117 |
cttacttgtgtggtttgaattacactgatagacatgttggaattattttgcaacagaaagtgaaatgctctgatataaagagcataccacaagcacagct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215633 |
cttacttgtgtggtttgaattacactgatagacatgttggaattattttgcaacagaaagtgaaatgctctgatataaagagcataccacaagcacagct |
3215534 |
T |
|
| Q |
217 |
taattatccatcattttctattttgttggggtctacttctc |
257 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3215533 |
taattatccatcattttctatattgttggggtctacttctc |
3215493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 3207795 - 3207586
Alignment:
| Q |
19 |
accagctgatttatttgccactggtgctggacatgtcaacccttcgaaagcaaacgatccaggacttgtttatgatattgaaccaaatgattatgttcct |
118 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
3207795 |
accagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggacttgtttatgatattgaaacaaatgattatgttcct |
3207696 |
T |
|
| Q |
119 |
tacttgtgtggtttgaattacactgatagacatgttggaattattttgcaacagaaagtgaaatgctctgatataaagagcataccacaagcacagctta |
218 |
Q |
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|| ||||||||||||||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3207695 |
tatttgtgtggtttgaattatactgatagacaagttggagttattttgcaacaaaaagtgaaatgctctgatgtaaagagcataccacaagcacagctta |
3207596 |
T |
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| Q |
219 |
attatccatc |
228 |
Q |
| |
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|||||||||| |
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| T |
3207595 |
attatccatc |
3207586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 3201821 - 3201593
Alignment:
| Q |
19 |
accagctgatttatttgccactggtgctggacatgtcaacccttcgaaagcaaacgatccaggacttgtttatgatattgaaccaaatgattatgttcct |
118 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
3201821 |
accagctgatgtatttgccactggtgctggacatgttaacccttcaaaagcaaacgatccgggacttgtttatgatattgaaacaaatgattatgttcct |
3201722 |
T |
|
| Q |
119 |
tacttgtgtggtttgaattacactgatagacatgttggaattattttgcaacagaaagtgaaatgctctgatataaagagcataccacaagcacagctta |
218 |
Q |
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|| ||||||||||||||||| ||||||| ||| ||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
3201721 |
tatttgtgtggtttgaattatactgatatacaagttggaattatattgcaacaaaaagtgaaatgctctgatgtaaagagcataccacaagcacaactta |
3201622 |
T |
|
| Q |
219 |
attatccatcattttctattttgttgggg |
247 |
Q |
| |
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|||| |||||| |||||||| ||||||| |
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| T |
3201621 |
attacccatcaatttctattcggttgggg |
3201593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 3219239 - 3219101
Alignment:
| Q |
17 |
aaaccagctgatttatttgccactggtgctggacatgtcaacccttcgaaagcaaacgatccaggacttgtttatgatattgaaccaaatgattatgttc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
3219239 |
aaaccagctgatttatttgccactggtgctggatatgtcaaccatttgaaagcaaacgatccaggacttgtttatgacattgaaccaaatgacattgttc |
3219140 |
T |
|
| Q |
117 |
cttacttgtgtggtttgaattacactgatagacatgttg |
155 |
Q |
| |
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|||||||| ||||||||||||| ||||||| ||| |||| |
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| T |
3219139 |
cttacttgggtggtttgaattatactgatatacaagttg |
3219101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 249
Target Start/End: Complemental strand, 3220647 - 3220421
Alignment:
| Q |
23 |
gctgatttatttgccactggtgctggacatgtcaacccttcgaaagcaaacgatccaggacttgtttatgatattgaaccaaatgattatgttccttact |
122 |
Q |
| |
|
|||||| | ||||| |||||||| |||||||| || ||| ||||| || ||||| || ||||||||||||||||||||| | |||||||||||||| |
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| T |
3220647 |
gctgatatttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattatgttccttatc |
3220548 |
T |
|
| Q |
123 |
tgtgtggtttgaattacactgatagacatgttggaattattttgcaacagaaagtgaaatgctctgatataaagagcataccacaagcacagcttaatta |
222 |
Q |
| |
|
||||||||||| ||| |||||| | | ||| | ||||| | |||| ||||||||| || ||| || | || || |||||| |||| || | ||||| |
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| T |
3220547 |
tgtgtggtttgggttattctgataaagagattgaagttattgttcaacggaaagtgaagtgttctaatgtgaaaagtataccagaagctcaattgaatta |
3220448 |
T |
|
| Q |
223 |
tccatcattttctattttgttggggtc |
249 |
Q |
| |
|
||| || ||||||||| |||||||||| |
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| T |
3220447 |
tccttctttttctattctgttggggtc |
3220421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 250
Target Start/End: Complemental strand, 3225617 - 3225405
Alignment:
| Q |
38 |
actggtgctggacatgtcaacccttcgaaagcaaacgatccaggacttgtttatgatattgaaccaaatgattatgttccttacttgtgtggtttgaatt |
137 |
Q |
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|||||||| |||||||| || ||| ||||| || ||||| || ||||||||||||||||||||| | |||||||||||||| | ||||||||| || |
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| T |
3225617 |
actggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattatgttccttatctatgtggtttgggtt |
3225518 |
T |
|
| Q |
138 |
acactgatagacatgttggaattattttgcaacagaaagtgaaatgctctgatataaagagcataccacaagcacagcttaattatccatcattttctat |
237 |
Q |
| |
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| |||||| | | ||| | ||||| | || ||||||||| |||||| || | || || |||||| |||||||||| || ||||| || || ||||| |
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| T |
3225517 |
attctgataaagagattgaagttattgttcagtggaaagtgaagtgctctaatgtgaaaagtataccagaagcacagctgaactatccttctttctctat |
3225418 |
T |
|
| Q |
238 |
tttgttggggtct |
250 |
Q |
| |
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| ||||||||||| |
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| T |
3225417 |
tctgttggggtct |
3225405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 3230865 - 3230770
Alignment:
| Q |
38 |
actggtgctggacatgtcaacccttcgaaagcaaacgatccaggacttgtttatgatattgaaccaaatgattatgttccttacttgtgtggtttg |
133 |
Q |
| |
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|||||||| |||||||| || |||| ||||| || ||||| || ||||||||||||||||||||| | |||||||||||||| | ||||||||| |
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| T |
3230865 |
actggtgcaggacatgttaatccttttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattatgttccttatctttgtggtttg |
3230770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 3179161 - 3179271
Alignment:
| Q |
23 |
gctgatttatttgccactggtgctggacatgtcaacccttcgaaagcaaacgatccaggacttgtttatgatattgaaccaaatgattatgttccttact |
122 |
Q |
| |
|
|||||| | ||||| |||||||| |||||||| || ||| ||||| || ||||| || ||||||||||||||| ||||| | ||||| |||||||| |
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| T |
3179161 |
gctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgatattcaaccagaagattacgttccttatc |
3179260 |
T |
|
| Q |
123 |
tgtgtggtttg |
133 |
Q |
| |
|
||||||||||| |
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|
| T |
3179261 |
tgtgtggtttg |
3179271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 3239679 - 3239569
Alignment:
| Q |
23 |
gctgatttatttgccactggtgctggacatgtcaacccttcgaaagcaaacgatccaggacttgtttatgatattgaaccaaatgattatgttccttact |
122 |
Q |
| |
|
|||||| | ||||| |||||||| |||||||| || ||| ||||| || ||||| || ||||||||||||||| ||||| | ||||| |||||||| |
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|
| T |
3239679 |
gctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgatattcaaccagaagattacgttccttatc |
3239580 |
T |
|
| Q |
123 |
tgtgtggtttg |
133 |
Q |
| |
|
||||||||||| |
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|
| T |
3239579 |
tgtgtggtttg |
3239569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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