View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_low_17 (Length: 253)
Name: NF11832_low_17
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 47909323 - 47909087
Alignment:
| Q |
1 |
tggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataaatataagcacg |
100 |
Q |
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| T |
47909323 |
tggggtggacaagtatttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataaatataagcacg |
47909224 |
T |
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| Q |
101 |
catgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgttacagtgc |
200 |
Q |
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| T |
47909223 |
catgctatatgggcgcagtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgttacagtgc |
47909124 |
T |
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| Q |
201 |
cctaaatattgctccatatggaaaagaccctgtgttc |
237 |
Q |
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| T |
47909123 |
cctaaatattgctccatatggaaaagaccctgtgttc |
47909087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 47928251 - 47928019
Alignment:
| Q |
1 |
tggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataaatataagcacg |
100 |
Q |
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| T |
47928251 |
tggggtggacaagtgtttagttatgaggtcaaaacaaaacctcctcacacaggaacacagatgggtagtggagatgcagcaagtggtcgatttggggccg |
47928152 |
T |
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| Q |
101 |
catgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgttacagtgc |
200 |
Q |
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| T |
47928151 |
catgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtacacatgctgcagaaccatattgttacagtgc |
47928052 |
T |
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| Q |
201 |
cctaaatattgctccatatggaaaagaccctgt |
233 |
Q |
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| T |
47928051 |
cctcaatgacgctccatatggaaaagatcctgt |
47928019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 47918486 - 47918257
Alignment:
| Q |
1 |
tggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataaatataagcacg |
100 |
Q |
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||||||||||||||||||||||||| ||| |||| || |||||||||| |||||||||||||| ||||||||||||||||||||||||| | | | |
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| T |
47918486 |
tggggtggacaagtgtttagttatgaggtcaaaaaaa---ctcctcacactggaacacaaatgggtagtggagaagaagcatataataaatttggggttg |
47918390 |
T |
|
| Q |
101 |
catgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgttacagtgc |
200 |
Q |
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| T |
47918389 |
catgttacatgggtggtgtgagaatcaaagataattcgcaagcacttaagtacccatcatttgtaagtacacatgctatagaaccatattgttacagtgc |
47918290 |
T |
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| Q |
201 |
cctaaatattgctccatatggaaaagaccctgt |
233 |
Q |
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| T |
47918289 |
cttcaatgatgctccatatggaaaagatcctgt |
47918257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 47946827 - 47946747
Alignment:
| Q |
1 |
tggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagca |
81 |
Q |
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| T |
47946827 |
tggggtggacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaacacaaatgggtagtggagaagcagca |
47946747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 47935685 - 47935605
Alignment:
| Q |
1 |
tggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagca |
81 |
Q |
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| T |
47935685 |
tggggaggacaagtgtttagttatcaggtcaaaactacccctcctcacacaggaacacagatgggtagtggagaagaagca |
47935605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 47946711 - 47946595
Alignment:
| Q |
117 |
tgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgttacagtgccctaaatattgctcca |
216 |
Q |
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|||||||||||| ||||| ||| || |||| ||||| |||||||| |||| ||| |||| | ||| ||| | |||||||||||||| || || || | |
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| T |
47946711 |
tgtgagaattaaggattattcagaaactctcaagtatccacaatttgtaagtacatatgcagcagaaccttactgttacagtgccctcaacgatgttcaa |
47946612 |
T |
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| Q |
217 |
tatggaaaagaccctgt |
233 |
Q |
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| T |
47946611 |
tatggaaaagatcctgt |
47946595 |
T |
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