View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_low_19 (Length: 242)
Name: NF11832_low_19
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 17466370 - 17466136
Alignment:
| Q |
1 |
aagtcaaaacggtactagttcttctggcaaatttgagctattataatcataaaatttacatcatgatcaaagttttagtgttatgttgcatggttgacga |
100 |
Q |
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| T |
17466370 |
aagtcaaaacggtactagttcttctggcaaatttgagctattgtaatcataaaatttacatcatgatcaaagttttagtgttatgttgcatggttgacga |
17466271 |
T |
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| Q |
101 |
catcagtccgattcttgcggaaataccgggctaagcacgcaaaccacacataacaacaccnnnnnnntatatatataaaattaaagtgttttttaccaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| |
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| T |
17466270 |
catcagtccgattcttgcggaaataccgggctaagcacgcaaaccacacataacaacac-----aaaaaaaaatataaaattaaagtgttttttaccaac |
17466176 |
T |
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| Q |
201 |
aatttaggacaacaaattcccaaataaggactaacctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
17466175 |
aatttaggacaacaaattcccaaataaggactaacctttg |
17466136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43116398 - 43116159
Alignment:
| Q |
1 |
aagtcaaaacggtactagttcttctggcaaatttgagctattataatcataaaatttacatcatgatcaaagttttagtgttatgttgcatggttgacga |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43116398 |
aagtcaaaacggtactagttcttttggcaaatttgagctattgtaatcataaaatttacatcatgatcaaagttttagtgttatgttgcatggttgacga |
43116299 |
T |
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| Q |
101 |
catcagtccgattcttgcggaaataccgggctaagcacgcaaaccacacataacaacaccnnnnnnntatatatataaaattaaagtgttttttaccaac |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |
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| T |
43116298 |
catcagtctgattcttgcggaaataccgggctaagcacgcaaaccacacataacaacacaaaaaaaaaaaaattataaaattaaagtgttttttaccaac |
43116199 |
T |
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| Q |
201 |
aatttaggacaacaaattcccaaataaggactaacctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
43116198 |
aatttaggacaacaaattcccaaataaggactaacctttg |
43116159 |
T |
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