View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_low_20 (Length: 240)
Name: NF11832_low_20
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 43116725 - 43116567
Alignment:
| Q |
18 |
aaaagtcgaatcagattgaaaatccaccatttttccaatacacggggaacaacttttaataataatcggtgctacctgggcaggatttactctattaata |
117 |
Q |
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| T |
43116725 |
aaaagtcgaatcagattgaaaatccaccatttttccaatacacggggaacaacttttaataataatcggtgctacatgggcaggatttactctattaata |
43116626 |
T |
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| Q |
118 |
atttccaaacaataatctatgacaacaatccaaatttgaagaaattaagctttgaacaa |
176 |
Q |
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| T |
43116625 |
atttccaaacaataatctatgacaacaatccaaatttgaagaaattaagctttgaacaa |
43116567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 43116531 - 43116478
Alignment:
| Q |
187 |
ttacaacctattagaaactatttcttagtctaccgatcaataagcgtaattaat |
240 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
43116531 |
ttacaacctaatataaactatttcttagtctaccgatcaataagcgtaattaat |
43116478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 17466697 - 17466539
Alignment:
| Q |
18 |
aaaagtcgaatcagattgaaaatccaccatttttccaatacacggggaacaacttttaataataatcggtgctacctgggcaggatttactctattaata |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17466697 |
aaaattcgaatcagattgaaaatccaccatttttccaatacatggggaacaacttttaataataatcggtgctacctgggcaagatttactctattaata |
17466598 |
T |
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| Q |
118 |
atttccaaacaataatctatgacaacaatccaaatttgaagaaattaagctttgaacaa |
176 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17466597 |
attttcaaacaataatctatgacaacaatccaaatttgaagaaattaagctttgaacaa |
17466539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 17466503 - 17466450
Alignment:
| Q |
187 |
ttacaacctattagaaactatttcttagtctaccgatcaataagcgtaattaat |
240 |
Q |
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||||||||||| | |||||||||||| ||||||||||||||||||||||||||| |
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| T |
17466503 |
ttacaacctatcataaactatttcttggtctaccgatcaataagcgtaattaat |
17466450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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