View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11832_low_21 (Length: 239)

Name: NF11832_low_21
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11832_low_21
NF11832_low_21
[»] chr4 (8 HSPs)
chr4 (1-223)||(9000084-9000306)
chr4 (1-223)||(9030818-9031040)
chr4 (5-218)||(8954972-8955185)
chr4 (56-223)||(8900496-8900663)
chr4 (12-223)||(8979315-8979526)
chr4 (5-223)||(8914401-8914619)
chr4 (6-223)||(8966174-8966391)
chr4 (31-208)||(8929338-8929515)
[»] chr5 (2 HSPs)
chr5 (56-223)||(20073955-20074122)
chr5 (12-223)||(9400193-9400404)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9000306 - 9000084
Alignment:
Q  1 cacgtgaaaattgcactataaatggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaa 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  9000306 cacgtgaaaattgcactataagtggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccctaatgtttggaaaaa 9000207  T
Q  101 cgcagaagaattttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttggagctggtcgtagaatttgc 200  Q
      |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9000206 tccagaagaattttatcctgaaagattcttagaaagttctataaattttaatggacaagattttgaactaataccctttggagctggtcgtagaatttgc 9000107  T
Q  201 ccaggtatgcctatggcagttgc 223  Q
    |||||||||||||||||||||||    
T  9000106 ccaggtatgcctatggcagttgc 9000084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9030818 - 9031040
Alignment:
Q  1 cacgtgaaaattgcactataaatggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9030818 cacgtgaaaattgcactataaatggatacaatattccagccaggacaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaa 9030917  T
Q  101 cgcagaagaattttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttggagctggtcgtagaatttgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9030918 cgcagaagaattttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttggagctggccgtagaatttgc 9031017  T
Q  201 ccaggtatgcctatggcagttgc 223  Q
    || ||  | || |||||||||||    
T  9031018 cccggcttacccatggcagttgc 9031040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 8954972 - 8955185
Alignment:
Q  5 tgaaaattgcactataaatggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgca 104  Q
    ||||||||| || |||| ||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||| |   || |||||  |||| ||    
T  8954972 tgaaaattgtaccataagtggatacaacattcctgcaaagacaatattatatgtaaatgcttgggctattcagagagatccagatatttggataaaccca 8955071  T
Q  105 gaagaattttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttggagctggtcgtagaatttgcccag 204  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  8955072 gaagaattttatcctgagagattcttagaaagttctataaattttattggacaagactttgaactaataccctttggagctggtcgtagaatttgccccg 8955171  T
Q  205 gtatgcctatggca 218  Q
    |||| |||||||||    
T  8955172 gtatacctatggca 8955185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 8900663 - 8900496
Alignment:
Q  56 tgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgcagaagaattttatcctgaaagattcttagaaagttctataaattttactgga 155  Q
    ||||||||||||||||||||| | |||||   |||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||  ||||    
T  8900663 tgtgaatgcttgggctattcatacagacccagatgtttggaaaaacccagaagagttttatcctgaaagatttttagaaagttctataaatttttatgga 8900564  T
Q  156 caagattttgaactaataccctttggagctggtcgtagaatttgcccaggtatgcctatggcagttgc 223  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  8900563 caagattttgaactaattccctttggagccggtcgtagaatttgcccaggtatgtctatggcagttgc 8900496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 8979315 - 8979526
Alignment:
Q  12 tgcactataaatggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgcagaagaat 111  Q
    |||| ||| ||||| ||||||||||||||| | |||||||||||||| || |  ||||||||||| ||||| | ||||  |||| ||||  |||||||||    
T  8979315 tgcattatcaatggctacaatattccagcccaaacaatattgtatgtaaacgtctgggctattcaaagagatcctaatacttggaaaaatccagaagaat 8979414  T
Q  112 tttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttggagctggtcgtagaatttgcccaggtatgcc 211  Q
    ||||||| || |||||| ||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| || || ||| |    
T  8979415 tttatcccgagagattcatagaaagttctataaattttattggacatgatttcgaactaataccctttggagctggtcgtagaatttgtcctggcatgtc 8979514  T
Q  212 tatggcagttgc 223  Q
    ||||||||||||    
T  8979515 tatggcagttgc 8979526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 8914619 - 8914401
Alignment:
Q  5 tgaaaattgcactataaatggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgca 104  Q
    |||||| |||||||||||||| | | | ||||| || ||| | ||| ||| ||||||||||||||||||||| | ||||   ||||||||| ||||| ||    
T  8914619 tgaaaaatgcactataaatggcttccaaattcccgcaaaggcgatagtgtttgtgaatgcttgggctattcatacagactcaaatgtttggaaaaaccca 8914520  T
Q  105 gaagaattttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttggagctggtcgtagaatttgcccag 204  Q
    |||||||||||||| || ||||| |||||||||||| ||||||||  ||||||||||||||||||||| || |||||||| |||||||||||||| ||||    
T  8914519 gaagaattttatccagagagatttttagaaagttctttaaattttcatggacaagattttgaactaattccttttggagccggtcgtagaatttgtccag 8914420  T
Q  205 gtatgcctatggcagttgc 223  Q
    ||||| |||||||||||||    
T  8914419 gtatgtctatggcagttgc 8914401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 8966391 - 8966174
Alignment:
Q  6 gaaaattgcactataaatggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgcag 105  Q
    ||||| |||| ||||| ||| ||||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||  | |  |||| ||||  |||    
T  8966391 gaaaagtgcattataagtggttacaagattccagccaacacaatagtgtatgtgaatgcttgggctattcaaagagacccaagtaattggaaaaatccag 8966292  T
Q  106 aagaattttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttggagctggtcgtagaatttgcccagg 205  Q
    |||| |||||||| || |||||||| ||| |||| |  ||||||  |||||||||||||||| | || || |||||||| |||||||||||||| |||||    
T  8966291 aagagttttatcccgagagattcttggaatgttcgacgaattttcttggacaagattttgaatttattccgtttggagcaggtcgtagaatttgtccagg 8966192  T
Q  206 tatgcctatggcagttgc 223  Q
    |||  |||||| ||||||    
T  8966191 tatatctatgggagttgc 8966174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 8929515 - 8929338
Alignment:
Q  31 atattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgcagaagaattttatcctgaaagattctt 130  Q
    ||||||| || || |||||| | ||||||||||||||| ||||||| ||||||  | |  ||||| || |  | ||||| ||||||||||| ||||||||    
T  8929515 atattcctgcaaaaacaatagtatatgtgaatgcttggtctattcatagagactctgaaatttggaaagatccggaagagttttatcctgagagattctt 8929416  T
Q  131 agaaagttctataaattttactggacaagattttgaactaataccctttggagctggtcgtagaatttgcccaggtat 208  Q
    ||| |||||||||||||||  |||||| ||||||||| |||| || |||||||| || ||||||||||||||||||||    
T  8929415 agagagttctataaattttcttggacatgattttgaattaattccgtttggagcaggccgtagaatttgcccaggtat 8929338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 20074122 - 20073955
Alignment:
Q  56 tgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgcagaagaattttatcctgaaagattcttagaaagttctataaattttactgga 155  Q
    ||||||||||||||||||||| | ||||| |||||||||| ||||  ||||||||||||||||||| ||||| ||||||||||| |||||||||   |||    
T  20074122 tgtgaatgcttgggctattcatacagaccctaatgtttggaaaaatccagaagaattttatcctgagagatttttagaaagttcgataaattttcacgga 20074023  T
Q  156 caagattttgaactaataccctttggagctggtcgtagaatttgcccaggtatgcctatggcagttgc 223  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  20074022 caagattttgaactaattccctttggagccggtcgtagaatttgtccaggtatgtctatggcagttgc 20073955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 9400404 - 9400193
Alignment:
Q  12 tgcactataaatggatacaatattccagccaagacaatattgtatgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgcagaagaat 111  Q
    |||||||||  ||| ||| | |||||||| ||||||||| ||||||||||||||||||||||||| ||||||  |||||||||| || |  ||||||| |    
T  9400404 tgcactataggtggttaccagattccagcaaagacaatagtgtatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccagaagagt 9400305  T
Q  112 tttatcctgaaagattcttagaaagttctataaattttactggacaagattttgaactaataccctttggagctggtcgtagaatttgcccaggtatgcc 211  Q
    ||||||| || |||||||||||||||||||||||||||  ||||||||| |||||| | || ||||||||| |||| || |||||||| ||||| ||  |    
T  9400304 tttatccagagagattcttagaaagttctataaattttcttggacaagactttgaatttattccctttggatctggacgaagaatttgtccaggcatttc 9400205  T
Q  212 tatggcagttgc 223  Q
    ||||||||||||    
T  9400204 tatggcagttgc 9400193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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