View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11832_low_3 (Length: 702)
Name: NF11832_low_3
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 226 - 692
Target Start/End: Original strand, 12825839 - 12826304
Alignment:
| Q |
226 |
ggcagaaacactcttctcctccgtactccacaaatcttcctccaacactaaccccactagcttatcatatgttgatttgaccgnnnnnnntccctgactc |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
12825839 |
ggcagaaacactcttctcctccgtactccacaaatcttcctccaacactaaccccactagcttataatatgttgatttgaccgaaaaaa-tccctaactc |
12825937 |
T |
|
| Q |
326 |
ttccaaaccccacctccacctatcctcttcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctcccaaccaaaaaac |
425 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12825938 |
ttccaaaccccaccgccacctatcctcctcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctcccaaccaaaaaac |
12826037 |
T |
|
| Q |
426 |
tccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccacacacaactccttttggtttgacattgagtaaagtctag |
525 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12826038 |
tcccttctccactcgaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccacacacaactccttttggtttgacattgagtaaagtctag |
12826137 |
T |
|
| Q |
526 |
gatatttactcctaaacgtccggtctactcgccacttgacaatccaaaaactagaagtcaatccattaccaatagacaattccgaatttaaccactcttg |
625 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12826138 |
gatatttactcttaaacgtccggtccactcgccacttgacattccaaaaactagaagtcaatccattaccaatagacaattccgaatttaatcactcttg |
12826237 |
T |
|
| Q |
626 |
aaaaccaaagttatctaaattgaccacatctttccacctccaatttggagccattcgtccctccaac |
692 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12826238 |
aaaaccaaagttatctaaattgaccacatctttccacctccaatttggagccattcgtccctccaac |
12826304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 12825608 - 12825817
Alignment:
| Q |
18 |
aacttatccaatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgatgattcatccaccgtctcacaaaag |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12825608 |
aacttatcccatcacccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgacgattcatccaccgtctcacaaaag |
12825707 |
T |
|
| Q |
118 |
gtacaacactgaggagcatctgttggtaatacattcatcatcgaaagattcacccttgtaggtatttgatcatataggaacttccaagaaaacgctacaa |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
12825708 |
gtacaacactgaggagcatccgttggtaatacattcatcatcgaaagattcacccttgtagatattcgatcatataggagcttccaagaaaacgctacaa |
12825807 |
T |
|
| Q |
218 |
ccttcgaagg |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
12825808 |
ccttcgaagg |
12825817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 321 - 547
Target Start/End: Complemental strand, 47819766 - 47819540
Alignment:
| Q |
321 |
gactcttccaaaccccacctccacctatcctcttcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctcccaaccaa |
420 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||| ||| ||| || | | |||||||||||||||| ||| |
|
|
| T |
47819766 |
gactcttccaacccccacctccacctatcctccacatgcgaccacctcatatcctccaaatcacccaaaagattccctattagttgctcctcccaatcaa |
47819667 |
T |
|
| Q |
421 |
aaaactccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccacacacaactccttttggtttgacattgagtaaag |
520 |
Q |
| |
|
|||||||| | |||||||||||||| |||| |||| | || ||||| ||||||||||||| ||||| || ||||||||| ||||| || ||| | || |
|
|
| T |
47819666 |
aaaactccctcctccactcaaaatgtcactccgttgaagagccaactacctcccctatctctcccaccaacccctccttttgatttgaaatagagaagag |
47819567 |
T |
|
| Q |
521 |
tctaggatatttactcctaaacgtccg |
547 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
47819566 |
tctagggtatttactcctaaacgtccg |
47819540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 28571317 - 28571269
Alignment:
| Q |
316 |
tccctgactcttccaaaccccacctccacctatcctcttcatgagacca |
364 |
Q |
| |
|
|||| ||||| |||||||||||| |||||||||| || ||||||||||| |
|
|
| T |
28571317 |
tccccgactcctccaaaccccacttccacctatcttcctcatgagacca |
28571269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 316 - 547
Target Start/End: Complemental strand, 24189111 - 24188880
Alignment:
| Q |
316 |
tccctgactcttccaaaccccacctccacctatcctcttcatgagaccacctcatattctccaaatcattcaagagactcacaaatagttgctcctccca |
415 |
Q |
| |
|
|||| ||||| || ||||||||| |||||||||| || ||||||||||| |||| |||||||| ||| ||| | | || |||||||||||||| |
|
|
| T |
24189111 |
tccccgactcctctaaaccccacttccacctatcttcctcatgagaccaagtcatgccttccaaatctaccaatagatttgcgaagagttgctcctccca |
24189012 |
T |
|
| Q |
416 |
accaaaaaactccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccacacacaactccttttggtttgacattgag |
515 |
Q |
| |
|
| ||||||| ||| |||||||||||||||||||| | || | || || ||| |||||||||| || ||||| | || ||||||||||| || || |
|
|
| T |
24189011 |
atcaaaaaaatcccgtctccactcaaaatgccactcccttgaagagcctaccacctcccctatgtcacccaccattgaatctttttggtttgagatcgaa |
24188912 |
T |
|
| Q |
516 |
taaagtctaggatatttactcctaaacgtccg |
547 |
Q |
| |
|
||||||| |||| |||||||||||| ||||| |
|
|
| T |
24188911 |
aaaagtcttggatgtttactcctaaaagtccg |
24188880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 37035408 - 37035320
Alignment:
| Q |
47 |
gccaaacccttacggcaacctcacaatgaagaaatagatgaattgatgattcatccaccgtctcacaaaaggtacaacactgaggagcatc |
137 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||||| |||||| |||| ||||||||||| ||||||| ||||||||| | |||||||||| |
|
|
| T |
37035408 |
gccacacccttccggcaacctcacaatggagaaaaagatgagttgacgattcatccac--tctcacacaaggtacaaaaacgaggagcatc |
37035320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 24189397 - 24189326
Alignment:
| Q |
42 |
accttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgatgattcatccaccgtctcaca |
113 |
Q |
| |
|
||||||||| |||||| | || || |||||||||||||| || |||||||| |||||||||||| ||||||| |
|
|
| T |
24189397 |
accttgccacacccttcccgctacatcacaatgaagaaagaggtgaattgacgattcatccaccctctcaca |
24189326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 34774856 - 34774900
Alignment:
| Q |
61 |
gcaacctcacaatgaagaaatagatgaattgatgattcatccacc |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
34774856 |
gcaacctcacaatggagaaatagatgaattgatgattcgtccacc |
34774900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 392 - 487
Target Start/End: Original strand, 42749392 - 42749487
Alignment:
| Q |
392 |
actcacaaatagttgctcctcccaaccaaaaaactccattctccactcaaaatgccacttcgttaaggaaccaaccgcctcccctatctcccccac |
487 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||||||||| |||||| ||||| | |||| |||||| | |||| || ||||||||||||| ||||| |
|
|
| T |
42749392 |
actcgcaaaaagttgctcctcccaatcaaaaaactcccatctccaatcaaagttccacaccgttaaagcaccatcctcctcccctatctctcccac |
42749487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 42749014 - 42749086
Alignment:
| Q |
33 |
ccccattacaccttgccaaacccttacggcaacctcacaatgaagaaatagatgaattgatgattcatccacc |
105 |
Q |
| |
|
|||||| ||||| ||||| || || |||||||||||||||||||||| ||||||||||| ||| | |||||| |
|
|
| T |
42749014 |
ccccataacaccctgccacactctaccggcaacctcacaatgaagaaaaagatgaattgaggatccgtccacc |
42749086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University