View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_low_5 (Length: 551)
Name: NF11832_low_5
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 20 - 525
Target Start/End: Complemental strand, 4632189 - 4631683
Alignment:
| Q |
20 |
agagacgtgatcgtagggaaatcgaaagatttaaaagagaattctgaagaggaatggtatgtgattgatttgaaagatgataagagtttgatgaacaagg |
119 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632189 |
agagacgtgatcgccgggaaatcgaaagatttaaaagagaattctgaagagaaatggtatgtgattgatttgaaagatgataagagtttgatgaacaagg |
4632090 |
T |
|
| Q |
120 |
agaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacatattaatggagcagcttcggtttccgggtttgtttcttctaacaagcatga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4632089 |
agaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacatattaatggagcagcttcggtttccaggtttgtttcttctaacaagcatga |
4631990 |
T |
|
| Q |
220 |
aaagagcatatttgattcacctcctttgcataaacaacaaagtgaagggaaaatattaatccttgatttttcagatcattttggaaatgtaattttataa |
319 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4631989 |
aaagagcatatttgattcacctcctttgcataaacaacaaagtgaagggaaaatattaatccttgatttttcagatcattttggaaatgtaattttataa |
4631890 |
T |
|
| Q |
320 |
tccatcaagcacaagtactttagaatcttcgtaatctaagttaacaagcatgatagacccatcttgaatttcgtatgttat-gtttacagtttttcggaa |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
4631889 |
tccatcaagcacaagtactttagaatcttcgtaatctaagttaacaagcatggtagacccatcttgaatttcgtatgttatcgtttacagattttcggaa |
4631790 |
T |
|
| Q |
419 |
ttatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacctacaataatccattccactacaacaaaattt |
518 |
Q |
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||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| |
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| T |
4631789 |
ttatatgcatgtagtatgtatgatttaaatcagttttcttttaaccaaattaataaatatgtgtttgcctacaataagtcattcctctacaacaaaattt |
4631690 |
T |
|
| Q |
519 |
tccaaaa |
525 |
Q |
| |
|
||||||| |
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| T |
4631689 |
tccaaaa |
4631683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 521
Target Start/End: Complemental strand, 27002587 - 27002485
Alignment:
| Q |
419 |
ttatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacctacaataatccattccactacaacaaaattt |
518 |
Q |
| |
|
|||||||||| |||||| | || || | |||||||| ||||||| || ||||| |||| ||||||| || ||||||| ||||| ||| |||||||||| |
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| T |
27002587 |
ttatatgcatataatatctttgtttgggatcagtttgcttttaagcatattaacaaatctgtgtttgtctgtaataatctattcctctataacaaaattt |
27002488 |
T |
|
| Q |
519 |
tcc |
521 |
Q |
| |
|
||| |
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|
| T |
27002487 |
tcc |
27002485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 48250451 - 48250199
Alignment:
| Q |
20 |
agagacgtgatcgtagggaaatcgaaagatttaaaagagaattctgaagaggaatggtatgtgattgatttgaaagatgataagagtttgatgaacaagg |
119 |
Q |
| |
|
||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48250451 |
agagacgtgattgcggggaaatcgaaagatttgaaagagaattctgaagaggagtggtctgtgattgacttgaaagatgataagagtttgatgaacaagg |
48250352 |
T |
|
| Q |
120 |
agaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacatattaatggagcagcttcggtttccgggtttgtttcttctaacaagcatga |
219 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||| ||||| ||||| |
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| T |
48250351 |
agaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacagattaaaggagcagcttcggtttttgggtttgtatcttcaaacaaacatga |
48250252 |
T |
|
| Q |
220 |
aaagagcatatttgattcacctcctttgcataaacaacaaagtgaagggaaaa |
272 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
48250251 |
aaagagtatatttgattcacctcctttgcataaacaacaaagtgatgggaaaa |
48250199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 400 - 518
Target Start/End: Complemental strand, 27892811 - 27892693
Alignment:
| Q |
400 |
tgtttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacctacaataatcca |
499 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |
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| T |
27892811 |
tgtttaccgtttttcggatttatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaacaaatctgtgtttgcctacaataatccg |
27892712 |
T |
|
| Q |
500 |
ttccactacaacaaaattt |
518 |
Q |
| |
|
|||| |||||||||||||| |
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| T |
27892711 |
ttcctctacaacaaaattt |
27892693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 290 - 518
Target Start/End: Complemental strand, 12075215 - 12074987
Alignment:
| Q |
290 |
tcagatcattttggaaatgtaattttataatccatcaagcacaagtactttagaatcttcgtaatctaagttaacaagcatgatagacccatcttgaatt |
389 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||| | |||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||| |
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| T |
12075215 |
tcagatcgttttggaaatgtaatttta-aatccttcaaacgcaagtactttagaatctttgtactctaagttaactagcatggtagacccatcttgaatt |
12075117 |
T |
|
| Q |
390 |
tcgtatgttat-gtttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacct |
488 |
Q |
| |
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||||||||||| ||||| ||| || ||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||| |
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|
| T |
12075116 |
tcgtatgttatcgtttatggttatttggatttatatacatgtaatatgtatgatttgaatcagtttccttttaaacgaattaacaaatatgtgtttgcct |
12075017 |
T |
|
| Q |
489 |
acaataatccattccactacaacaaaattt |
518 |
Q |
| |
|
||||||||||||||| ||| |||||||||| |
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| T |
12075016 |
acaataatccattcctctataacaaaattt |
12074987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 875454 - 875511
Alignment:
| Q |
402 |
tttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttt |
459 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
875454 |
tttacagtttttcggatttatatgcatgtaatatgtatgatttgaattagtatccttt |
875511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 29737498 - 29737555
Alignment:
| Q |
290 |
tcagatcattttggaaatgtaattttataatccatcaagcacaagtactttagaatct |
347 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | |||| ||||||||| ||||| |
|
|
| T |
29737498 |
tcaggtcattttggaaatgtaattttataatccataatgcacgagtactttaaaatct |
29737555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 402 - 525
Target Start/End: Complemental strand, 272756 - 272633
Alignment:
| Q |
402 |
tttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacctacaataatccatt |
501 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
272756 |
tttacagtttttcggatttatatgcatgtaatatgtatgatttgaattagtatccttttaaccaaattaataaatatgtgtttgcctacaataatccgtt |
272657 |
T |
|
| Q |
502 |
ccactacaacaaaattttccaaaa |
525 |
Q |
| |
|
| |||||||| ||||||||||| |
|
|
| T |
272656 |
tctttacaacaatattttccaaaa |
272633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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