View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11832_low_6 (Length: 551)

Name: NF11832_low_6
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11832_low_6
NF11832_low_6
[»] chr2 (3 HSPs)
chr2 (47-534)||(3116218-3116704)
chr2 (97-161)||(39760406-39760470)
chr2 (1-29)||(3116758-3116786)
[»] chr7 (1 HSPs)
chr7 (106-161)||(24451952-24452007)
[»] chr4 (2 HSPs)
chr4 (97-159)||(44137381-44137443)
chr4 (98-161)||(51103377-51103440)
[»] chr3 (4 HSPs)
chr3 (97-151)||(55446946-55447000)
chr3 (97-149)||(39840661-39840713)
chr3 (97-149)||(42045773-42045825)
chr3 (97-161)||(55447207-55447271)
[»] chr5 (1 HSPs)
chr5 (100-161)||(20399034-20399095)
[»] scaffold0022 (1 HSPs)
scaffold0022 (100-149)||(122569-122618)
[»] chr1 (2 HSPs)
chr1 (100-161)||(38576564-38576625)
chr1 (100-148)||(27293283-27293331)
[»] chr8 (1 HSPs)
chr8 (97-137)||(32029419-32029459)
[»] chr6 (2 HSPs)
chr6 (100-160)||(17333286-17333345)
chr6 (97-161)||(21969299-21969363)


Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 47 - 534
Target Start/End: Complemental strand, 3116704 - 3116218
Alignment:
Q  47 cttcactcaccgagagacttaattgagannnnnnnnacaaagaatggaattattttgaaatattaatagtgtcagggattaatttgagaattagttacaa 146  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||  ||||||||||||| ||||| ||||| ||||||    
T  3116704 cttcactcaccgagagacttaattgagatttttttt-caaagaatggaattattttgaaatattaactgtgtcagggattagtttgaaaattacttacaa 3116606  T
Q  147 agataaagaccaattgacagtttaacgtatgttttgttctataacttatagacaacgtgaacnnnnnnnaggttcttctaagatgacatttaatcaagaa 246  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  3116605 agacaaagaccaattggcagtttaacgtatgttttgttctataacttatagacaacgtgaactttttttaggttcttctaagatgacatttaatcaagaa 3116506  T
Q  247 aaaggaataatggaagggacaaatccgattaattaatcaagagaaatcttcttctgtgttcctttcttctcatcattgaattatgaattattttatttaa 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3116505 aaaggaataatggaagggacaaatccgattaattaatcaagagaaatcttcttctgtgctcctttcttctcatcattgaattatgaattattttatttaa 3116406  T
Q  347 taattatcaaatcaagaccaattgaacttatttttcttatgttcatcgctttggtgtcaataacaactacaactaataggaacacataagaagcttcatg 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  3116405 taattatcaaatcaagaccaattgaacttatttttcttatgttcatcgctttggtgtcaataacaactgcaactaatagaaacacataagaagcttcatg 3116306  T
Q  447 tagtttcgtatctcaagggcatttcttaccacacatccatagtttagttattggattctcttcttttgtaacgccacatcacccttct 534  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3116305 tagtttcgtatctcaagggcatttcttaccacaaatccatagtttagttattggattctcttcttttgtaacgccacatcacccttct 3116218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 39760406 - 39760470
Alignment:
Q  97 tattttgaaatattaatagtgtcagggattaatttgagaattagttacaaagataaagaccaatt 161  Q
    ||||||||||||||||||  |||| ||| |||||||||||| | ||||||||||| |||||||||    
T  39760406 tattttgaaatattaatatagtcatggactaatttgagaatcacttacaaagatagagaccaatt 39760470  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 3116786 - 3116758
Alignment:
Q  1 attgagaaacttttgacaaaacagatact 29  Q
    |||||||||||||||||||||||||||||    
T  3116786 attgagaaacttttgacaaaacagatact 3116758  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 24451952 - 24452007
Alignment:
Q  106 atattaatagtgtcagggattaatttgagaattagttacaaagataaagaccaatt 161  Q
    |||||||||| ||||||||||||||||||| |   |||||||||||||||||||||    
T  24451952 atattaatagagtcagggattaatttgagagtggcttacaaagataaagaccaatt 24452007  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 44137443 - 44137381
Alignment:
Q  97 tattttgaaatattaatagtgtcagggattaatttgagaattagttacaaagataaagaccaa 159  Q
    ||||||||||||||||||| ||||| || |||||||||||| | ||||||| |||| ||||||    
T  44137443 tattttgaaatattaatagagtcagagactaatttgagaatcacttacaaaaataaggaccaa 44137381  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 51103440 - 51103377
Alignment:
Q  98 attttgaaatattaatagtgtcagggattaatttgagaattagttacaaagataaagaccaatt 161  Q
    |||||||| ||||||||| ||||||||  |||||||||||| | |||||||| | |||||||||    
T  51103440 attttgaattattaatagagtcagggaccaatttgagaatttggtacaaagacagagaccaatt 51103377  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 55447000 - 55446946
Alignment:
Q  97 tattttgaaatattaatagtgtcagggattaatttgagaattagttacaaagata 151  Q
    ||||||||||||||||||| |||| |||||||||||| ||| | |||||||||||    
T  55447000 tattttgaaatattaatagagtcatggattaatttgacaatcacttacaaagata 55446946  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 39840713 - 39840661
Alignment:
Q  97 tattttgaaatattaatagtgtcagggattaatttgagaattagttacaaaga 149  Q
    ||||||||||||||||||| ||||| || |||||||||||| | |||||||||    
T  39840713 tattttgaaatattaatagagtcagagactaatttgagaatcacttacaaaga 39840661  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 42045825 - 42045773
Alignment:
Q  97 tattttgaaatattaatagtgtcagggattaatttgagaattagttacaaaga 149  Q
    ||||||||||||||||||| || | ||||||||||||| || | |||||||||    
T  42045825 tattttgaaatattaatagagttatggattaatttgaggatcacttacaaaga 42045773  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 55447207 - 55447271
Alignment:
Q  97 tattttgaaatattaatagtgtcagggattaatttgagaattagttacaaagataaagaccaatt 161  Q
    |||||| ||||||||| || ||||| || | |||||||||| | ||||||||| |||||||||||    
T  55447207 tattttaaaatattaagagagtcagagactgatttgagaatcacttacaaagacaaagaccaatt 55447271  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 20399034 - 20399095
Alignment:
Q  100 tttgaaatattaatagtgtcagggattaatttgagaattagttacaaagataaagaccaatt 161  Q
    |||||||||||||||| |||||||| ||||||||||||   |||||||||||  ||||||||    
T  20399034 tttgaaatattaatagagtcagggactaatttgagaatgtcttacaaagatagggaccaatt 20399095  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 122569 - 122618
Alignment:
Q  100 tttgaaatattaatagtgtcagggattaatttgagaattagttacaaaga 149  Q
    |||||||||||||||| ||||| || |||||||||||||  |||||||||    
T  122569 tttgaaatattaatagagtcagagactaatttgagaatttcttacaaaga 122618  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 38576625 - 38576564
Alignment:
Q  100 tttgaaatattaatagtgtcagggattaatttgagaattagttacaaagataaagaccaatt 161  Q
    ||||||||||||||||  |||  || |||||||||||| | |||||||||||| ||||||||    
T  38576625 tttgaaatattaatagaatcaaagactaatttgagaatgatttacaaagataaggaccaatt 38576564  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 27293331 - 27293283
Alignment:
Q  100 tttgaaatattaatagtgtcagggattaatttgagaattagttacaaag 148  Q
    |||||||||||||||| ||||| || |||||||||||| | ||||||||    
T  27293331 tttgaaatattaatagagtcagagactaatttgagaatgatttacaaag 27293283  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 32029459 - 32029419
Alignment:
Q  97 tattttgaaatattaatagtgtcagggattaatttgagaat 137  Q
    |||||||||||||||| || ||||| |||||||||||||||    
T  32029459 tattttgaaatattaacagagtcagagattaatttgagaat 32029419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 17333345 - 17333286
Alignment:
Q  100 tttgaaatattaatagtgtcagggattaatttgagaattagttacaaagataaagaccaat 160  Q
    |||||||||||||||| |||||||| ||||||||| |||  |||||||||||  |||||||    
T  17333345 tttgaaatattaatagagtcagggactaatttgagtatt-cttacaaagatagggaccaat 17333286  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 21969299 - 21969363
Alignment:
Q  97 tattttgaaatattaatagtgtcagggattaatttgagaattagttacaaagataaagaccaatt 161  Q
    |||||| |||||||||| | ||||| || |||||||||| | | |||||||||||| ||||||||    
T  21969299 tattttaaaatattaattgagtcagagactaatttgagattcacttacaaagataatgaccaatt 21969363  T

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