View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11832_low_7 (Length: 471)
Name: NF11832_low_7
Description: NF11832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11832_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 14547127 - 14546900
Alignment:
| Q |
17 |
caaataagtactaatactagtatttgtgtattcatacacagtaaaaccgtgatatcctatcaaaatatgtgaatattttagagaaataaatatataaatt |
116 |
Q |
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| T |
14547127 |
caaataagtactaatactagtatttgtgtattcatacacagtaaaaccgtgatatcctatcaaaatatgtgaatattttagagaaataaatatataaatt |
14547028 |
T |
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| Q |
117 |
ttgaatgagaagatttgtt-actcaataagaaagaatgaaaaatgcaatgcatgtataaatgaagttggcacacaccttaaaagggatgtttctaggcca |
215 |
Q |
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| T |
14547027 |
ttgaatgagaagatttgttgactcaataagaaagaatgaaagatgcaatgcatgtataaatgaagttggcacacaccttaaaagggatgtttctaggcca |
14546928 |
T |
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| Q |
216 |
aacactaattcacataaatgaattgcat |
243 |
Q |
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| T |
14546927 |
aacactaattcacataaatgaattgcat |
14546900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 209 - 326
Target Start/End: Complemental strand, 14546889 - 14546772
Alignment:
| Q |
209 |
taggccaaacactaattcacataaatgaattgcatgttgatgttcttttttaatggcaaatattatatataagagaaaaacattgaatgcccatggtttg |
308 |
Q |
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| T |
14546889 |
taggccaaacactaattcacataaatgaattgcatgtagatgttcttttttaatggaaaatattatatataagagaaaaacattgaatgcccgtggtttg |
14546790 |
T |
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| Q |
309 |
agtaacaccataggtgac |
326 |
Q |
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| T |
14546789 |
agtgacaccataggtgac |
14546772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 460
Target Start/End: Complemental strand, 14546698 - 14546634
Alignment:
| Q |
400 |
tgcatgttgatgtacatgtaccattccaatgt----tatccattacaagcaaattttgaaccttt |
460 |
Q |
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| T |
14546698 |
tgcatgttgatgtacatgtaccattccaatgttatctatccatcacaaacaaattttgaaccttt |
14546634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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