View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_high_10 (Length: 406)
Name: NF11833_high_10
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 208 - 391
Target Start/End: Original strand, 9967193 - 9967374
Alignment:
| Q |
208 |
tctaattttgcaacactaacgtacgaatgtgatttttctttgcaatttgtatctaatgttgcataactgaagttaaacaactcattaaaaagcgcacgtg |
307 |
Q |
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| T |
9967193 |
tctaattttgcaacactaacgtacgaatgtgatttttctttgcaatttgtatctaatgttgcataactgaaattaaacaactcattaaaaagcgcacgtg |
9967292 |
T |
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| Q |
308 |
ataacttgtatagctaaaacacatgtgaatataactaagatatcacatgcaattttttatgagtcattttatcttagccctttg |
391 |
Q |
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| T |
9967293 |
ataacttgtatagctaaaacacatgtgaatataactaagatatcacatgcaattttt--tgagtcattttatcttagccctttg |
9967374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 9962226 - 9962332
Alignment:
| Q |
21 |
ttggaattggtagcttgaaggaactatcatagccccaaaaaatattgaagcatggaaatggccaaataacaatgatagaggcttatggatccgttttata |
120 |
Q |
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| T |
9962226 |
ttggaattggtagcttgaaggaactatcttagccccaaaaaatattgaagcatggaaatggccaaataacaatgatagaggcttatggatccgttttata |
9962325 |
T |
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| Q |
121 |
gagataa |
127 |
Q |
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| T |
9962326 |
gagataa |
9962332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 9983051 - 9983167
Alignment:
| Q |
30 |
gtagcttgaaggaactatcatagccccaaaaaatattgaagcatggaaatggccaaataacaatgatagaggcttatggatccgttttatagagataagt |
129 |
Q |
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| T |
9983051 |
gtagcttgaaggaactatcatagctccaaaaaacattgaagcatggaaatggccaaatgacaattataaaggttcatggatccgttttatagagataagt |
9983150 |
T |
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| Q |
130 |
ggtcttgttgtttatgg |
146 |
Q |
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| T |
9983151 |
ggtcttattgtttatgg |
9983167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 9960021 - 9959917
Alignment:
| Q |
258 |
atctaatgttgcataactgaagttaaacaactcattaaaaagcgcacgtgataacttgtatagctaaaacacatgtgaatataactaagatatcacatgc |
357 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| ||||||| | ||||||| ||||||||||| ||| |
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| T |
9960021 |
atctaatgttgcataattgaaattaaacaactcattaaaaagcgcacgtgataacttgcataactaaaacgcgtgtgaat----ttaagatatcacgtgc |
9959926 |
T |
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| Q |
358 |
aatttttta |
366 |
Q |
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| T |
9959925 |
aatttttta |
9959917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 341
Target Start/End: Original strand, 9974093 - 9974176
Alignment:
| Q |
258 |
atctaatgttgcataactgaagttaaacaactcattaaaaagcgcacgtgataacttgtatagctaaaacacatgtgaatataa |
341 |
Q |
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| T |
9974093 |
atctaatgttgcataactgaaattaaacgactcattaaaaagcgcacgtgataacttgcataactaaaacgcgtgtgaatataa |
9974176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 9868739 - 9868821
Alignment:
| Q |
233 |
aatgtgatttttctttgcaatttgtatctaatgttgcataactgaagttaaacaactcattaaaaagcgcacgtgataacttg |
315 |
Q |
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| T |
9868739 |
aatgtgatttttattggcaatttgtatatgatgttgcagaactgaaattaaatgactcattaaaaagtacacgtgataacttg |
9868821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 9983182 - 9983232
Alignment:
| Q |
143 |
atggcaaaggttctcaatggtgggactgccattccaatatcaagtgtgaaa |
193 |
Q |
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| T |
9983182 |
atggcaaaggtgctcaatggtgggattgccattccaatatcaagtgtgaaa |
9983232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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