View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_high_11 (Length: 375)
Name: NF11833_high_11
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 368
Target Start/End: Original strand, 14880950 - 14881298
Alignment:
| Q |
20 |
aagtagactcggtattagaatcaagattctcaacgattgctttcgccaatccaaaatctcccaagtgtgcatccatattggaatctaacaatatattgct |
119 |
Q |
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| T |
14880950 |
aagtagactcggtattagaatcaagattctcaacgattgctttcgccaatccaaaatctcccaagtgtgcatccatattggaatctaacaatatattgct |
14881049 |
T |
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| Q |
120 |
ggatttgatgtccctatgaatgatccttggcacacaatcatgatgaaggtactccattccttgagctaaccccaaagcaattttgaaccgtgtgtcccaa |
219 |
Q |
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| T |
14881050 |
ggatttgatatcccggtgaatgatctttggcacacaatcatgatgaaggtactccattccttgagctaaccccaaagcaattttgaaccgtgtgtcccaa |
14881149 |
T |
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| Q |
220 |
tcaaggcttctccttaacttgagagcatttccatgtaaccaatcccaaacacttccattctccatgaactcatatatcaacagattgcaaccatttcctt |
319 |
Q |
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| T |
14881150 |
tcaaggcttctccttaacttgagagcatttccatgtaaccaatcccaaacacttccattctccatgaactcatatatcaacagattgcaaccatttcctt |
14881249 |
T |
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| Q |
320 |
tgtgtctattgctacaacaaccaaccagtttcaccaaatgtctctgctt |
368 |
Q |
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| T |
14881250 |
tgtgtctattgctacaacaaccaaccagtttcaccaaatgtctatgctt |
14881298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 57 - 225
Target Start/End: Complemental strand, 39006831 - 39006663
Alignment:
| Q |
57 |
tgctttcgccaatccaaaatctcccaagtgtgcatccatattggaatctaacaatatattgctggatttgatgtccctatgaatgatccttggcacacaa |
156 |
Q |
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| T |
39006831 |
tgcttttgccagtccaaaatctcccaagtgtgcctccattttggaatctagcaatatgttgctggatttgatgtctctgtgaatgatctttggtgcacaa |
39006732 |
T |
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| Q |
157 |
tcatgatgaaggtactccattccttgagctaaccccaaagcaattttgaaccgtgtgtcccaatcaagg |
225 |
Q |
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| T |
39006731 |
tcgtgatgtaggtactccactccttgagctaaacccacagcaattttgaatcttgtctcccaatcaagg |
39006663 |
T |
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