View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_high_13 (Length: 354)
Name: NF11833_high_13
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_high_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 37485874 - 37485521
Alignment:
| Q |
1 |
ttggttaatttgagtcttatggcgaagtggaaatggcgtatccttcaagaggatttacctctttggaaagtggtgttgagagataagtatggtgattcat |
100 |
Q |
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| T |
37485874 |
ttggttaatttgagtcttatggcgaagtggaaatggcgtatccttcaagaggatttacctctttggaaagtggtgttgagagataagtatggtgattcat |
37485775 |
T |
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| Q |
101 |
tgtccggatcccacccggaggaagggatgagatggctgcgttttgcatctggatggtggaaagatttgatgaatttggaagggggtcttggagagcattg |
200 |
Q |
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| T |
37485774 |
tgtccggatcccacccggaggaagggacgagatggccgcgttttgcatccggatggtggaaagatttgatgaatttggaagggggtcttggagagcattg |
37485675 |
T |
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| Q |
201 |
gttttctaatagggtggtgagaaaagtttcaagtgggagggagacgcgcttttgaaaggataggtggattggtgatataccgctagcgaatgtcttccct |
300 |
Q |
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| T |
37485674 |
gttttctaatagggtggtgagaaaagtttcaagtgggagggagacgcgcttttgaaaggataggtggattggtgatataccgctagtgaatgtcttccct |
37485575 |
T |
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| Q |
301 |
aggctattttcaatttcgcttcaaaaggaggcaaaggtccgggacttgtgggtc |
354 |
Q |
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| T |
37485574 |
aggctattttcaatttcgcttcaaaaggaggcaaaggtccgggacttgtgggtc |
37485521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 27409210 - 27409134
Alignment:
| Q |
7 |
aatttgagtcttatggcgaagtggaaatggcgtatccttcaagaggatttacctctttggaaagtggtgttgagaga |
83 |
Q |
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| T |
27409210 |
aatttgagccttatggcaaagtggaagtggcgaattcttcaagacgaactacctctttggaaagtggttttgagaga |
27409134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 22905667 - 22905583
Alignment:
| Q |
8 |
atttgagtcttatggcgaagtggaaatggcgtatccttcaagaggatttacctctttggaaagtggtgttgagagataagtatgg |
92 |
Q |
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| T |
22905667 |
atttgagtcttatggcaaagtggaagtggcgtatgctccaagatgagctacccctttggaaaatggtgttgagagagaaatatgg |
22905583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 22957335 - 22957251
Alignment:
| Q |
8 |
atttgagtcttatggcgaagtggaaatggcgtatccttcaagaggatttacctctttggaaagtggtgttgagagataagtatgg |
92 |
Q |
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| T |
22957335 |
atttgagtcttatggcaaagtggaagtggcgtatgctccaagatgagctacccctttggaaaatggtgttgagagagaaatatgg |
22957251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 43442431 - 43442341
Alignment:
| Q |
2 |
tggttaatttgagtcttatggcgaagtggaaatggcgtatccttcaagaggatttacctctttggaaagtggtgttgagagataagtatgg |
92 |
Q |
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| T |
43442431 |
tggtgaatttgagtcttatggcaaagtggaagtggcgtatgctccaagatgagctacccctttggaaaacggtgttgagagagaaatatgg |
43442341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 24718878 - 24718963
Alignment:
| Q |
7 |
aatttgagtcttatggcgaagtggaaatggcgtatccttcaagaggatttacctctttggaaagtggtgttgagagataagtatgg |
92 |
Q |
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|||||||| |||||||| |||||||| |||| || |||||||| || ||||||||||||||||||| |||||||| || ||||| |
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| T |
24718878 |
aatttgagccttatggcaaagtggaagtggcaaattcttcaagacgaactacctctttggaaagtggttttgagagagaaatatgg |
24718963 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 28518091 - 28517994
Alignment:
| Q |
1 |
ttggttaatttgagtcttatggcgaagtggaaatggcgtatccttcaagaggatttacctctttggaaagtggtgttgagagataagtatggtgattc |
98 |
Q |
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|||| ||||||||| ||| |||| |||||||| |||||| | || ||| ||| ||||| |||||||| |||||||||||||||| ||||| ||||| |
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| T |
28518091 |
ttggctaatttgagccttttggcaaagtggaagtggcgtttactccaactggacctacctatttggaaattggtgttgagagataaatatggagattc |
28517994 |
T |
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