View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11833_high_16 (Length: 343)
Name: NF11833_high_16
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 22714012 - 22714204
Alignment:
| Q |
18 |
catcaacgaccaacactacgaccaccacaaaccatttctctgatcaccaccgaccaagtcaaccatccctccaaccaccttagatcacctttgaccaaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714012 |
catcaacgaccaacactacgaccaccaaaaaccatttctctgatcaccatcgaccaagtcaaccatccctccaaccaccttagatcacctttgaccaaca |
22714111 |
T |
|
| Q |
118 |
ctacgaccaccaatgacgactattgaaaactactctaaccaccgttgatcatctctgagggttccaatcacctgcccaccaatcatcattttg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||||||||| |
|
|
| T |
22714112 |
ctacgaccaccaatgacgactattgaaaactactctaaccaccgttgatcatctccgagggtttcaatcacctgtccgccaatcatcattttg |
22714204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 22714180 - 22714275
Alignment:
| Q |
229 |
cacctgtcttccaatcatcattctggcagttgcagccacttgtccaccaatcaccactccgaccattgcagccacttgtttgctgatcaccactcc |
324 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714180 |
cacctgtccgccaatcatcattttggcagttgcagccacttgtccgccaatcaccactccgaccattgcagccacttgtttgctgatcaccactcc |
22714275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University