View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11833_high_18 (Length: 337)

Name: NF11833_high_18
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11833_high_18
NF11833_high_18
[»] chr5 (4 HSPs)
chr5 (73-241)||(29293723-29293889)
chr5 (196-234)||(3752723-3752761)
chr5 (196-234)||(14635624-14635662)
chr5 (298-335)||(29293629-29293666)
[»] chr3 (2 HSPs)
chr3 (73-241)||(27002941-27003108)
chr3 (196-235)||(29025538-29025577)
[»] chr7 (1 HSPs)
chr7 (132-241)||(33627853-33627955)
[»] chr4 (4 HSPs)
chr4 (132-241)||(8260777-8260887)
chr4 (132-241)||(8274194-8274304)
chr4 (196-235)||(9374958-9374997)
chr4 (196-234)||(7648291-7648329)
[»] chr6 (3 HSPs)
chr6 (199-241)||(31504548-31504590)
chr6 (199-241)||(31513174-31513216)
chr6 (196-234)||(21289819-21289857)
[»] scaffold0242 (1 HSPs)
scaffold0242 (196-241)||(17659-17704)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 29293889 - 29293723
Alignment:
Q  73 actacaaattgttcatatattttgattnnnnnnncattgtaattttttatttnnnnnnncattccaccaagacaacaaaaaccactaggtcattctcaca 172  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  29293889 actacaaattgttcatatattttgattaaaaaaacattgtaattttttatttaaaaaaacattccaccaagacaacaaaaaccactaggtcattctcaca 29293790  T
Q  173 aacactaggtcatgacttaaattttttgagttatgtctatgtttcgaatttgagcaattagccgataaa 241  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  29293789 aacactaggtcatgactcaaa--ttttgagttatgtctatgtttcgaatttgagcaattagccgataaa 29293723  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 3752761 - 3752723
Alignment:
Q  196 ttttgagttatgtctatgtttcgaatttgagcaattagc 234  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  3752761 ttttgagttatgactatgttttgaatttgagcaattagc 3752723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 14635662 - 14635624
Alignment:
Q  196 ttttgagttatgtctatgtttcgaatttgagcaattagc 234  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  14635662 ttttgagttatgactatgttttgaatttgagcaattagc 14635624  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 29293666 - 29293629
Alignment:
Q  298 aagtgactgagtcacatccaaaagtcctagctgaattg 335  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  29293666 aagtgactgagtcacatccaaaagttctagttgaattg 29293629  T

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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 27003108 - 27002941
Alignment:
Q  73 actacaaattgttcatatattttgattnnnnnnncattgtaattttttatttnnnnnnn-cattccaccaagacaacaaaaaccactaggtcattctcac 171  Q
    ||||||||||||||||||||||| |||       ||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  27003108 actacaaattgttcatatattttcattaaaaaaacattgtaattttttatttaaaaaaaacattccaccaagacaacaaaaaccactaggtcattctcac 27003009  T
Q  172 aaacactaggtcatgacttaaattttttgagttatgtctatgtttcgaatttgagcaattagccgataaa 241  Q
    |||||||||||||||||| |||  |||||||||||||||||||||||||||||| |||||| ||||||||    
T  27003008 aaacactaggtcatgactcaaa--ttttgagttatgtctatgtttcgaatttgaacaattaaccgataaa 27002941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 29025577 - 29025538
Alignment:
Q  196 ttttgagttatgtctatgtttcgaatttgagcaattagcc 235  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  29025577 ttttgagttatgactatgttttgaatttgagcaattagcc 29025538  T

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Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 33627853 - 33627955
Alignment:
Q  132 cattccaccaagacaacaaaaaccactaggtcattctcacaaacactaggtcatgacttaaattttttgagttatgtctatgtttcgaatttgagcaatt 231  Q
    ||||||||||||||||||||||||||||||||||||||||      |||||||||||| || |||||||||||||||||||||||||||||||| |||||    
T  33627853 cattccaccaagacaacaaaaaccactaggtcattctcac------taggtcatgactcaa-ttttttgagttatgtctatgtttcgaatttgaacaatt 33627945  T
Q  232 agccgataaa 241  Q
    | ||||||||    
T  33627946 aaccgataaa 33627955  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 8260777 - 8260887
Alignment:
Q  132 cattccaccaagacaacaaaaaccactaggtcatt-ctcacaaacactaggtcatgacttaaattttttgagttatgtctatgtttcgaatttgagcaat 230  Q
    |||||||| | |||||||||||||||||||||||| || | || ||| ||||||| ||||||| || |||||||| | |||||||| |||||||||||||    
T  8260777 cattccactatgacaacaaaaaccactaggtcattgcttaaaaccaccaggtcataacttaaaattgttgagttaagactatgttttgaatttgagcaat 8260876  T
Q  231 tagccgataaa 241  Q
    ||||| |||||    
T  8260877 tagcctataaa 8260887  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 8274194 - 8274304
Alignment:
Q  132 cattccaccaagacaacaaaaaccactaggtcatt-ctcacaaacactaggtcatgacttaaattttttgagttatgtctatgtttcgaatttgagcaat 230  Q
    |||||||| | |||||||||||||||||||||||| || | || ||| ||||||| ||||||| || |||||||| | |||||||| |||||||||||||    
T  8274194 cattccactatgacaacaaaaaccactaggtcattgcttaaaaccaccaggtcataacttaaaattgttgagttaagactatgttttgaatttgagcaat 8274293  T
Q  231 tagccgataaa 241  Q
    ||||| |||||    
T  8274294 tagcctataaa 8274304  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 9374997 - 9374958
Alignment:
Q  196 ttttgagttatgtctatgtttcgaatttgagcaattagcc 235  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  9374997 ttttgagttatgactatgttttgaatttgagcaattagcc 9374958  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 7648329 - 7648291
Alignment:
Q  196 ttttgagttatgtctatgtttcgaatttgagcaattagc 234  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  7648329 ttttgagttatgactatgttttgaatttgagcaattagc 7648291  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 31504548 - 31504590
Alignment:
Q  199 tgagttatgtctatgtttcgaatttgagcaattagccgataaa 241  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  31504548 tgagttatgtctatgtttcgaatttgagcaattagtcgataaa 31504590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 31513174 - 31513216
Alignment:
Q  199 tgagttatgtctatgtttcgaatttgagcaattagccgataaa 241  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  31513174 tgagttatgtctatgtttcgaatttgagcaattagtcgataaa 31513216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 21289857 - 21289819
Alignment:
Q  196 ttttgagttatgtctatgtttcgaatttgagcaattagc 234  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  21289857 ttttgagttatgactatgttttgaatttgagcaattagc 21289819  T

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Target: scaffold0242 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 17659 - 17704
Alignment:
Q  196 ttttgagttatgtctatgtttcgaatttgagcaattagccgataaa 241  Q
    |||||||||||| ||||||||  ||||||||||||||||| |||||    
T  17659 ttttgagttatgactatgttttaaatttgagcaattagcctataaa 17704  T

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