View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_high_30 (Length: 289)
Name: NF11833_high_30
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 47270910 - 47270634
Alignment:
| Q |
1 |
aacgtggaaggtaagtgattccctggatttggatttgttgcgacaatttcatacattcacacggccagcacatcgttggctgtttgatcgagatcaaacg |
100 |
Q |
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| T |
47270910 |
aacgtggaaggtaagtgattccctggatttggatttgttgcgacaatttcacacattcacacggccagcacatcgttggctgtttgatcgagatcaaaca |
47270811 |
T |
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| Q |
101 |
gtttaaatttcattcaatgcgcaatttaacgccgatcttgatccaacaatcaccgacgtgttgactgcgtgaattgttgactgcaacacaaatccaaatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47270810 |
gtttaaatttcattcaatgcgcaatttaacgccgatcttgatccaacaaccaccgacgtgttgactgcgtgaattgttgactgca--acaaatccaaatc |
47270713 |
T |
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| Q |
201 |
caaattcgtaattccatatgttcttataccagtacatcatactgatacttattttatcctaatgttggtggtacctttg |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47270712 |
caaattcgtaattccatatgttcttataccagtacatcatactgatacttattttatcctaatgttggtggtacctttg |
47270634 |
T |
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