View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_high_4 (Length: 493)
Name: NF11833_high_4
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 25728337 - 25728634
Alignment:
| Q |
18 |
acaacatcgtacaatttttggtgtaggaataatctaa------ggtacaccacgtgtggaatcattacatctaaataattgattttattttgtacaaatc |
111 |
Q |
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| T |
25728337 |
acaacatcgtacaatttttggtgtaggaataatctaattataaggtacaccacgtgtggaatcattacatctaaataattgattttattttgtataaatc |
25728436 |
T |
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| Q |
112 |
aaaaatggctctctctctaattttgtataacccagcaaggcatgtgcaccgtccaattacaatagaataacatccaaatcctaannnnnnnaagtgatcg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25728437 |
aaaaatggctctctctctaattttgtataacccagcaaggcatgtgcaccgtccaattacaatagaataacatccaaatcctaa-ttttttaagtgatcg |
25728535 |
T |
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| Q |
212 |
ggagaagctaattgactttgccaaatatttttgtatacaattaatttatttgagggaattgaattttggtgactcgctagaattagataaagtctcaaaa |
311 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25728536 |
ggagaagctaattgactttgccaagtatttttgtatac----aatttatttgagggaattgaattttggtgactcgctagaattagataaagtctcaaaa |
25728631 |
T |
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