View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11833_high_41 (Length: 247)

Name: NF11833_high_41
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11833_high_41
NF11833_high_41
[»] chr1 (10 HSPs)
chr1 (24-213)||(39843619-39843814)
chr1 (211-245)||(33762526-33762560)
chr1 (211-247)||(12025291-12025327)
chr1 (211-247)||(20014568-20014604)
chr1 (211-247)||(35618085-35618121)
chr1 (211-247)||(45324116-45324152)
chr1 (211-246)||(14498065-14498100)
chr1 (211-245)||(33763240-33763274)
chr1 (206-247)||(22024213-22024254)
chr1 (211-247)||(17015230-17015266)
[»] chr5 (1 HSPs)
chr5 (206-247)||(17064433-17064474)
[»] chr8 (13 HSPs)
chr8 (211-247)||(11404111-11404147)
chr8 (211-247)||(19723421-19723457)
chr8 (211-247)||(29767296-29767332)
chr8 (211-247)||(41553395-41553431)
chr8 (211-247)||(11909409-11909445)
chr8 (211-247)||(27879546-27879582)
chr8 (211-247)||(28019727-28019763)
chr8 (213-247)||(11610390-11610424)
chr8 (206-247)||(4840250-4840291)
chr8 (211-247)||(22711619-22711655)
chr8 (211-247)||(28739547-28739583)
chr8 (211-247)||(32296626-32296661)
chr8 (211-247)||(36261756-36261792)
[»] chr7 (8 HSPs)
chr7 (211-247)||(35109801-35109837)
chr7 (211-247)||(45278562-45278598)
chr7 (211-247)||(245250-245286)
chr7 (211-247)||(21577084-21577120)
chr7 (211-247)||(38265223-38265259)
chr7 (211-247)||(41151283-41151319)
chr7 (211-247)||(12472231-12472267)
chr7 (211-247)||(38405140-38405176)
[»] chr4 (7 HSPs)
chr4 (211-247)||(55231797-55231833)
chr4 (215-247)||(2570311-2570343)
chr4 (211-247)||(46494384-46494420)
chr4 (211-247)||(51713951-51713987)
chr4 (206-247)||(29576525-29576566)
chr4 (211-247)||(4080538-4080574)
chr4 (211-247)||(47626979-47627015)
[»] chr3 (10 HSPs)
chr3 (211-247)||(25910652-25910688)
chr3 (211-247)||(358928-358964)
chr3 (211-247)||(773687-773723)
chr3 (211-247)||(43334040-43334076)
chr3 (211-247)||(50823808-50823844)
chr3 (211-247)||(50852016-50852052)
chr3 (211-247)||(8400965-8401002)
chr3 (211-247)||(37454729-37454766)
chr3 (211-247)||(35198875-35198910)
chr3 (211-247)||(37330594-37330629)
[»] chr2 (13 HSPs)
chr2 (211-247)||(21638007-21638043)
chr2 (211-247)||(558425-558461)
chr2 (211-247)||(2357062-2357098)
chr2 (211-247)||(2754037-2754073)
chr2 (211-247)||(17136497-17136533)
chr2 (211-247)||(26690264-26690300)
chr2 (211-247)||(36380118-36380154)
chr2 (212-247)||(25987648-25987683)
chr2 (213-247)||(5039530-5039564)
chr2 (213-247)||(10745220-10745254)
chr2 (211-240)||(6672774-6672803)
chr2 (211-247)||(40156150-40156186)
chr2 (211-247)||(45136956-45136992)
[»] chr6 (3 HSPs)
chr6 (211-247)||(2711726-2711762)
chr6 (211-247)||(20685435-20685471)
chr6 (211-247)||(35163736-35163772)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 39843814 - 39843619
Alignment:
Q  24 ctttcctatttagtgtgctaaaactttccaaagatacgtatggccagtgttatttcttcttcttccggtaatctacgtatcgacgacataaatttctaat 123  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39843814 ctttcatatttagtgtgctaaaactttccaaagctacgtatggacagtgttatttcttcttcttccggtaatctacgtatcgacgacataaatttctaat 39843715  T
Q  124 atataaaggatatgcaatatcaataatataaacaagcaaatgcacttgttca------cgtaggagaggctacatttctatatagccctattgttt 213  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||      ||||||||||||||||||||||| ||||||||||||||    
T  39843714 atataaaggatatgcaatatcaataatataaacaagcgaatgcagttgttcatgtgctcgtaggagaggctacatttctatctagccctattgttt 39843619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 33762526 - 33762560
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatg 245  Q
    |||||||||||||||||||||||||||||||||||    
T  33762526 ttttttggttacaaaaattttagggtgaggggatg 33762560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 12025327 - 12025291
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||||||||||||||||||| ||||    
T  12025327 ttttttggttacaaaaattttagggtgagggggtggt 12025291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 20014604 - 20014568
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  20014604 tttttttgttacaaaaattttagggtgaggggatggt 20014568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 35618121 - 35618085
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||| ||||||||||||||||||||    
T  35618121 ttttttggttacaaaatttttagggtgaggggatggt 35618085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 45324152 - 45324116
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||| ||||||||||||||||||||||||||    
T  45324152 ttttttggttgcaaaaattttagggtgaggggatggt 45324116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 14498065 - 14498100
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatgg 246  Q
    |||||| |||||||||||||||||||||||||||||    
T  14498065 tttttttgttacaaaaattttagggtgaggggatgg 14498100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 33763240 - 33763274
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatg 245  Q
    ||||||||||||| |||||||||||||||||||||    
T  33763240 ttttttggttacagaaattttagggtgaggggatg 33763274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 22024254 - 22024213
Alignment:
Q  206 tattgttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||| |||||| |||||| |||||||||||||||||||||||    
T  22024254 tattttttttttgttacataaattttagggtgaggggatggt 22024213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 17015266 - 17015230
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  17015266 ttttttggttacataaattttaggatgaggggatggt 17015230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 17064474 - 17064433
Alignment:
Q  206 tattgttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  17064474 tatttttttttggttacaaaaattttagggtgaggggatggt 17064433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 11404147 - 11404111
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  11404147 ttttttggttacaaaaattttagggtgaggggatggt 11404111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 19723457 - 19723421
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  19723457 ttttttggttacaaaaattttagggtgaggggatggt 19723421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 29767332 - 29767296
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  29767332 ttttttggttacaaaaattttagggtgaggggatggt 29767296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 41553431 - 41553395
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  41553431 ttttttggttacaaaaattttagggtgaggggatggt 41553395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 11909409 - 11909445
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||| ||||||||||||||||||||    
T  11909409 ttttttggttacaaaatttttagggtgaggggatggt 11909445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 27879546 - 27879582
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  27879546 tttttttgttacaaaaattttagggtgaggggatggt 27879582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 28019727 - 28019763
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  28019727 tttttttgttacaaaaattttagggtgaggggatggt 28019763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 11610424 - 11610390
Alignment:
Q  213 ttttggttacaaaaattttagggtgaggggatggt 247  Q
    ||||| |||||||||||||||||||||||||||||    
T  11610424 ttttgtttacaaaaattttagggtgaggggatggt 11610390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 4840291 - 4840250
Alignment:
Q  206 tattgttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||| |||||| |||||| |||||||||||||||||||||||    
T  4840291 tattttttttttgttacagaaattttagggtgaggggatggt 4840250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 22711655 - 22711619
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  22711655 tttttttgttacaaaaattttaggatgaggggatggt 22711619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 28739547 - 28739583
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  28739547 tttttttgttacaaaatttttagggtgaggggatggt 28739583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 32296626 - 32296661
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||| ||||||||||||||||||||    
T  32296626 ttttttggttacaaaa-ttttagggtgaggggatggt 32296661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 36261792 - 36261756
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  36261792 tttttttgttacaaaaattttaaggtgaggggatggt 36261756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 35109837 - 35109801
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  35109837 ttttttggttacaaaaattttagggtgaggggatggt 35109801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 45278598 - 45278562
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  45278598 ttttttggttacaaaaattttagggtgaggggatggt 45278562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 245250 - 245286
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  245250 tttttttgttacaaaaattttagggtgaggggatggt 245286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 21577084 - 21577120
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  21577084 tttttttgttacaaaaattttagggtgaggggatggt 21577120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 38265223 - 38265259
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    ||||||||||||| |||||||||||||||||||||||    
T  38265223 ttttttggttacataaattttagggtgaggggatggt 38265259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 41151319 - 41151283
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    ||||||||||||||||| |||||||||||||||||||    
T  41151319 ttttttggttacaaaaaatttagggtgaggggatggt 41151283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 12472267 - 12472231
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  12472267 ttttttggttacacaaagtttagggtgaggggatggt 12472231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 38405140 - 38405176
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  38405140 tttttttgttacaaaatttttagggtgaggggatggt 38405176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 55231833 - 55231797
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  55231833 ttttttggttacaaaaattttagggtgaggggatggt 55231797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 2570343 - 2570311
Alignment:
Q  215 ttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||||||||||||||||||||    
T  2570343 ttggttacaaaaattttagggtgaggggatggt 2570311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 46494384 - 46494420
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||| ||||||||||||||||||||    
T  46494384 ttttttggttacaaaatttttagggtgaggggatggt 46494420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 51713951 - 51713987
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  51713951 tttttttgttacaaaaattttagggtgaggggatggt 51713987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 29576566 - 29576525
Alignment:
Q  206 tattgttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||| |||||| ||||||||||||||||||||||||| ||||    
T  29576566 tattttttttttgttacaaaaattttagggtgagggggtggt 29576525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 4080538 - 4080574
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||||||||| || |||||||||||    
T  4080538 ttttttggttacaaaaattttaaggcgaggggatggt 4080574  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 47626979 - 47627015
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  47626979 tttttttgttacaaaaattttagggtgaggagatggt 47627015  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 25910652 - 25910688
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  25910652 ttttttggttacaaaaattttagggtgaggggatggt 25910688  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 358928 - 358964
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    ||||||||||||| |||||||||||||||||||||||    
T  358928 ttttttggttacataaattttagggtgaggggatggt 358964  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 773723 - 773687
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    ||||||||||||||||||| |||||||||||||||||    
T  773723 ttttttggttacaaaaattctagggtgaggggatggt 773687  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 43334040 - 43334076
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||| ||||||||||||||||||||    
T  43334040 ttttttggttacaaaatttttagggtgaggggatggt 43334076  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 50823844 - 50823808
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  50823844 tttttttgttacaaaaattttagggtgaggggatggt 50823808  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 50852016 - 50852052
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  50852016 tttttttgttacaaaaattttagggtgaggggatggt 50852052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 8401002 - 8400965
Alignment:
Q  211 ttttttggttaca-aaaattttagggtgaggggatggt 247  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  8401002 ttttttggttacataaaattttagggtgaggggatggt 8400965  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 37454729 - 37454766
Alignment:
Q  211 ttttttggttaca-aaaattttagggtgaggggatggt 247  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  37454729 ttttttggttacacaaaattttagggtgaggggatggt 37454766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 35198910 - 35198875
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||| ||||||||||||||||||||    
T  35198910 ttttttggttacaaaa-ttttagggtgaggggatggt 35198875  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 37330594 - 37330629
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||| ||||||||||||||||||||    
T  37330594 ttttttggttacaaaa-ttttagggtgaggggatggt 37330629  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 21638043 - 21638007
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  21638043 ttttttggttacaaaaattttagggtgaggggatggt 21638007  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 558425 - 558461
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  558425 tttttttgttacaaaaattttagggtgaggggatggt 558461  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 2357062 - 2357098
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  2357062 tttttttgttacaaaaattttagggtgaggggatggt 2357098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 2754037 - 2754073
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  2754037 tttttttgttacaaaaattttagggtgaggggatggt 2754073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 17136533 - 17136497
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  17136533 tttttttgttacaaaaattttagggtgaggggatggt 17136497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 26690300 - 26690264
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  26690300 tttttttgttacaaaaattttagggtgaggggatggt 26690264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 36380118 - 36380154
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  36380118 tttttttgttacaaaaattttagggtgaggggatggt 36380154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 25987648 - 25987683
Alignment:
Q  212 tttttggttacaaaaattttagggtgaggggatggt 247  Q
    ||||| ||||||||||||||||||||||||||||||    
T  25987648 ttttttgttacaaaaattttagggtgaggggatggt 25987683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 5039564 - 5039530
Alignment:
Q  213 ttttggttacaaaaattttagggtgaggggatggt 247  Q
    ||||||||||||||||||||| |||||||||||||    
T  5039564 ttttggttacaaaaattttagagtgaggggatggt 5039530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 10745220 - 10745254
Alignment:
Q  213 ttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||| ||||||||||||||||||||||||||||||    
T  10745220 tttttgttacaaaaattttagggtgaggggatggt 10745254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 240
Target Start/End: Original strand, 6672774 - 6672803
Alignment:
Q  211 ttttttggttacaaaaattttagggtgagg 240  Q
    ||||||||||||||||||||||||||||||    
T  6672774 ttttttggttacaaaaattttagggtgagg 6672803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 40156186 - 40156150
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  40156186 tttttttgttacaaaaattttatggtgaggggatggt 40156150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 45136956 - 45136992
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  45136956 tttttttgttacaaaaattttagggtgaagggatggt 45136992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 2711726 - 2711762
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  2711726 tttttttgttacaaaaattttagggtgaggggatggt 2711762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 20685471 - 20685435
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||||||||||||||||||||||||| ||||||||    
T  20685471 ttttttggttacaaaaattttagggtgaagggatggt 20685435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 35163736 - 35163772
Alignment:
Q  211 ttttttggttacaaaaattttagggtgaggggatggt 247  Q
    |||||| ||||||||||||||||||||||||||||||    
T  35163736 tttttttgttacaaaaattttagggtgaggggatggt 35163772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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