View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11833_high_46 (Length: 240)

Name: NF11833_high_46
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11833_high_46
NF11833_high_46
[»] chr3 (11 HSPs)
chr3 (14-223)||(5455052-5455261)
chr3 (21-223)||(5484842-5485044)
chr3 (14-225)||(5503042-5503253)
chr3 (14-223)||(5490229-5490438)
chr3 (21-223)||(5446500-5446699)
chr3 (14-223)||(5525879-5526091)
chr3 (14-223)||(5854019-5854228)
chr3 (14-177)||(5848764-5848927)
chr3 (1-177)||(5828035-5828208)
chr3 (16-206)||(20343674-20343864)
chr3 (1-206)||(5802338-5802540)
[»] chr6 (1 HSPs)
chr6 (21-223)||(25809113-25809312)
[»] chr2 (3 HSPs)
chr2 (21-90)||(34205796-34205865)
chr2 (21-74)||(34194286-34194339)
chr2 (21-74)||(34217237-34217290)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 5455052 - 5455261
Alignment:
Q  14 tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc 113  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5455052 tgttgtgaaaccaaagtatgcagccactcccatcatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc 5455151  T
Q  114 ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  5455152 ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatttaaatgt 5455251  T
Q  214 gttttcctta 223  Q
    ||||||||||    
T  5455252 gttttcctta 5455261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 5484842 - 5485044
Alignment:
Q  21 aaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattcctcaagg 120  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  5484842 aaaccaaagtaagcagccactcccaccatctctgatatctaaatttgcatatgcagtgcaagaacagtttttcaaacacattgtcttacattccttaagg 5484941  T
Q  121 cttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgtgttttcc 220  Q
    || ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||| |||||||    
T  5484942 ctcaagctcttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctccatcgggacaatttaaatgcgttttcc 5485041  T
Q  221 tta 223  Q
    |||    
T  5485042 tta 5485044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 5503042 - 5503253
Alignment:
Q  14 tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc 113  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  5503042 tgttgtcaaaccaaagtaagcagccactcccaccatctctgatatctgaatttgcatatgcagtgcaagaacagtttttcaaacacattgtcttacattc 5503141  T
Q  114 ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgt 213  Q
    ||||||||| ||| |  ||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||| || ||    
T  5503142 ctcaaggctcaagctcctgtcataccaagatgttgacgtgtctggcaacttcatgtttgtgtacggtaaaaatccatcgccatggagacaatttaaacgt 5503241  T
Q  214 gttttccttatg 225  Q
    ||||||||||||    
T  5503242 gttttccttatg 5503253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 5490229 - 5490438
Alignment:
Q  14 tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc 113  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5490229 tgttgttaaaccaaagtatgcagccactcccaccatctttgatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattc 5490328  T
Q  114 ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgt 213  Q
    ||||||||| ||| | |||| | |  |||||| ||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||| || ||    
T  5490329 ctcaaggctcaagctcttgttataatacgatgatgatgtatctggcaacttcatgtttgtgtacggtaaaaatccatcgccatggagacaatttaaacgt 5490428  T
Q  214 gttttcctta 223  Q
    ||||| ||||    
T  5490429 gtttttctta 5490438  T

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Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 5446500 - 5446699
Alignment:
Q  21 aaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattcctcaagg 120  Q
    |||||| |||| |||||||||   ||||| |||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||    
T  5446500 aaaccagagtaagcagccact---accatatctgatatctaaagttgcatatgcagaacaagaacagtttttcaaacacattgtcttacattcctcaagg 5446596  T
Q  121 cttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgtgttttcc 220  Q
    || ||| | |||| | |||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  5446597 ctcaagatcttgttataccatgatgatgatgtatctggtaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatttaaatgtgttttcc 5446696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 5525879 - 5526091
Alignment:
Q  14 tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc 113  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||| || ||||||||||| |||||| ||| ||||||||||||||||||||||||||    
T  5525879 tgttgttaaaccaaagtaagcagccactcccaccatctctgacatctgaatttgcatatgcagtgcaagaacaatttttcaaacacattgtcttacattc 5525978  T
Q  114 ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctaca---tggagacaatttcaa 210  Q
    ||| ||||| ||| | |||||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||  ||   | |||||||||| ||    
T  5525979 ctcgaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgtttgtgtacggtaaaaatccatccccatcgtcgagacaatttaaa 5526078  T
Q  211 tgtgttttcctta 223  Q
     ||||||||||||    
T  5526079 ggtgttttcctta 5526091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 5854228 - 5854019
Alignment:
Q  14 tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc 113  Q
    |||||| ||||||||||| ||||||||| ||| ||| ||||||||||||| ||||||||||| |||||| ||||||||||||||||| |||| |||||||    
T  5854228 tgttgtcaaaccaaagtaagcagccacttccaacatatctgatatctaaatttgcatatgcagtgcaagaacagtttttcaaacacactgtcatacattc 5854129  T
Q  114 ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgt 213  Q
    ||||||||| ||| | ||||||||||||||||||||||| ||||| ||||||||||||| ||| |||||||| |||||| ||| || ||||||| ||  |    
T  5854128 ctcaaggctcaagctcttgtcaaaccacgatgctgacgtgtctggtaacttcatgtttgcgtatggtaaaaacccatctccatagacacaatttaaactt 5854029  T
Q  214 gttttcctta 223  Q
    ||||||||||    
T  5854028 gttttcctta 5854019  T

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Target: chr3; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 5848927 - 5848764
Alignment:
Q  14 tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc 113  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  5848927 tgttgttaaaccaaagtaagcagccactcccaccatctctgatatctaaatttgcatatgcagtgcaagtacagtttttcaagcacagtgtcttacattc 5848828  T
Q  114 ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtac 177  Q
    ||||||||| ||| | |||||| |||| |||| |||||| ||||||||||||||| ||||||||    
T  5848827 ctcaaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtac 5848764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 5828208 - 5828035
Alignment:
Q  1 atgtccacaatattgttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacaca 100  Q
    |||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||  || ||||||||||| |||||| |||||||||||||||||    
T  5828208 atgtccacaatattgtt---aaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacaca 5828112  T
Q  101 ttgtcttacattcctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtac 177  Q
    |||||||||||||||||||||| ||| | |||||| |||| |||| |||||| ||||||||||||||| ||||||||    
T  5828111 ttgtcttacattcctcaaggctcaagttcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtac 5828035  T

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Target: chr3; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 20343674 - 20343864
Alignment:
Q  16 ttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattcct 115  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||||| | |||||||||||||    
T  20343674 ttgtcaaaccaaagtaagcaaccactcccaccatctctgatatctaaatttgcatatgcagtgcaattacaatttttcaaacacgtcgtcttacattcct 20343773  T
Q  116 caaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatt 206  Q
     |||||| ||| | |||||| |||| ||||| ||||| ||||||||||||||||||||||||   |||||||||||| ||| |||||||||    
T  20343774 gaaggctcaagctcttgtcataccatgatgccgacgtgtctggcaacttcatgtttgtgtacttcaaaaatccatctccattgagacaatt 20343864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 5802540 - 5802338
Alignment:
Q  1 atgtccacaatattgttgtgaaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacaca 100  Q
    ||||||| |||||||||   ||||||||||| ||||||||| |||||||| ||||||||| || ||||||||||  |||||| |||||||||||||||||    
T  5802540 atgtccataatattgtt---aaaccaaagtaagcagccactaccaccatccctgatatctgaatttgcatatgcggtgcaagaacagtttttcaaacaca 5802444  T
Q  101 ttgtcttacattcctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggag 200  Q
    ||||||||||||| |||||||| ||| | |||| | |  |||||| ||| |||||||| ||||||||||||||||||   ||||| |||||  ||| |||    
T  5802443 ttgtcttacattcttcaaggctaaagctcttgttataatacgatgatgatgtatctggtaacttcatgtttgtgtacttcaaaaagccatcaccattgag 5802344  T
Q  201 acaatt 206  Q
    ||||||    
T  5802343 acaatt 5802338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 25809312 - 25809113
Alignment:
Q  21 aaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattcctcaagg 120  Q
    |||||| |||| |||||||||   ||||| |||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||    
T  25809312 aaaccagagtaagcagccact---accatatctgatatctaaagttgcatatgcagaacaagaacagtttttcaaacacattgtcttacattcctcaagg 25809216  T
Q  121 cttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctacatggagacaatttcaatgtgttttcc 220  Q
    || ||| | |||| | |||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  25809215 ctcaagatcttgttataccatgatgatgatgtatctggtaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatttaaatgtgttttcc 25809116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 34205865 - 34205796
Alignment:
Q  21 aaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgcattgcaagtacagttt 90  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||| ||||||||||  ||||| ||||||||    
T  34205865 aaaccaaagtatgcaaccacttccaccatctctgacatctaaacttgcatatgctgtgcaattacagttt 34205796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 34194286 - 34194339
Alignment:
Q  21 aaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgc 74  Q
    ||||||||| | ||||||||| ||||||||||||| ||||||| ||||||||||    
T  34194286 aaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgc 34194339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 34217290 - 34217237
Alignment:
Q  21 aaaccaaagtatgcagccactcccaccatctctgatatctaaagttgcatatgc 74  Q
    ||||||||| | ||||||||| ||||||||||||| ||||||| ||||||||||    
T  34217290 aaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgc 34217237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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