View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_high_7 (Length: 433)
Name: NF11833_high_7
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 329
Target Start/End: Complemental strand, 7685561 - 7685246
Alignment:
| Q |
15 |
atttgacactcctagaaaggtctttcgtatggtattgtttagagtatgtctaggattcataatcacttccaaatgaatttgtcgtctactgctcacccta |
114 |
Q |
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| T |
7685561 |
atttgacactcctagaaaggtctttggtatggtattgtttagagtatgtctaggattcataatcacttccaaatgaatttctcgtctactgctcacccta |
7685462 |
T |
|
| Q |
115 |
actaactccttgttgaccgccaaaatttgtttgtcttagattatcatgttgcttcccaacaacaannnnnnnaaaataaataattgttggaaaactagta |
214 |
Q |
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| T |
7685461 |
actaactccttgttgaccgccaaaatttgtttgtcttagattatcatgttgcttcccaacaacaacccccccaaaataaataattgttgctaaaacagtg |
7685362 |
T |
|
| Q |
215 |
gcaaaatttgccttcctctaagaacctcaacattaactactcttacaaccaa-ctacgttcgtcaacatgaacgccataagtacggaccaaaccacgacc |
313 |
Q |
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|||||||| ||||||| ||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||| ||||||||||||||| |
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| T |
7685361 |
gcaaaattcgccttccgctaggaacctcaacattaactgctcttacaaccaagctacgtccgtcaacatgaacaccataagtaccgaccaaaccacgacc |
7685262 |
T |
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| Q |
314 |
tctttgactagggtct |
329 |
Q |
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|||||||||||||||| |
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| T |
7685261 |
tctttgactagggtct |
7685246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 82 - 417
Target Start/End: Complemental strand, 38979479 - 38979152
Alignment:
| Q |
82 |
tccaaatgaatttgtcgtctactgctcaccctaactaactccttgttgaccgccaaaatttgtttgtcttagattatcatgttgcttcccaacaacaann |
181 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||| | | |||||||||||| ||||||||||||||||||||||||| || |
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| T |
38979479 |
tccagatgaatttgtcgtctactgctcaccctaacta-ctccttgttgaccgtccagatttgtttgtct-agattatcatgttgcttcccaacaaaaacc |
38979382 |
T |
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| Q |
182 |
nnnnnaaaataaataattgttggaaaactagtagcaaaatttgccttcctctaagaacctcaacattaactactcttacaaccaa-ctacgttcgtcaac |
280 |
Q |
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|| | |||||| ||||| | |||||||| ||||||||||| |||| | |||| |||||||| ||||| ||| |||||| ||||||| |
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| T |
38979381 |
ccc-------aacaagttgttgcaaaacccatggcaaaattcgccttcctctaggaacattaacagtaactactactacaaacaagctacgtccgtcaac |
38979289 |
T |
|
| Q |
281 |
atgaacgccataagtacggaccaaaccacgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgat |
380 |
Q |
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||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
38979288 |
atgaacgacataagtgcagaccaaaccacgacctctttgactagggtcttaaggttgggcagtaaacccattaggaattatcttcccttctagtggtgat |
38979189 |
T |
|
| Q |
381 |
catagaattgggtgacatccacaccgaatgaaagaaa |
417 |
Q |
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|| |||||||||||||| | |||||||||||||||| |
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| T |
38979188 |
aattgaattgggtgacatactcaccgaatgaaagaaa |
38979152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 391
Target Start/End: Original strand, 5518656 - 5518736
Alignment:
| Q |
307 |
cacgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattgg |
391 |
Q |
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| T |
5518656 |
cacgacctctttaactaaggttttacggttgggcg----acccataaggaattaatttcccttctagtggtgatcatagaattgg |
5518736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 215 - 417
Target Start/End: Complemental strand, 16101860 - 16101657
Alignment:
| Q |
215 |
gcaaaatttgccttcctctaagaacctcaacattaactactcttaca--accaactacgttcgtcaacatgaacgccataagtacggaccaaaccacgac |
312 |
Q |
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|||||||| |||||||| || |||||||||| |||||||| ||||| | | || |||| | |||||||||||||||||||||||||||||||||| || |
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| T |
16101860 |
gcaaaattcgccttcctatagaaacctcaacactaactacttttacataagctac-acgtccatcaacatgaacgccataagtacggaccaaaccacaac |
16101762 |
T |
|
| Q |
313 |
ctctttgactagggtcttaagg-ttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattgggtgacatccacaccgaatga |
411 |
Q |
| |
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|||||||||||||| ||||||| |||| |||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
16101761 |
ctctttgactagggccttaaggtttggacagtaaacccataaggaattatcttc-cccctagtggtgatcataaaattgggtgacatcctcaccgaatga |
16101663 |
T |
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| Q |
412 |
aagaaa |
417 |
Q |
| |
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|||||| |
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| T |
16101662 |
aagaaa |
16101657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 293 - 417
Target Start/End: Complemental strand, 14655306 - 14655182
Alignment:
| Q |
293 |
agtacggaccaaaccacgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattggg |
392 |
Q |
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|||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||| || || ||| |||||||||||||| ||||||||||| |
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| T |
14655306 |
agtacggaccgaaacacgaactctttgactaaggtcttaaggttgggcagtaaacccataagaaactaatttcccttctagtggtgataatagaattggg |
14655207 |
T |
|
| Q |
393 |
tgacatccacaccgaatgaaagaaa |
417 |
Q |
| |
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||||| || || ||||||||||||| |
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| T |
14655206 |
tgacaccctcatcgaatgaaagaaa |
14655182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 14655529 - 14655443
Alignment:
| Q |
93 |
ttgtcgtctactgctcaccctaactaactccttgttgaccgccaaaatttgtttgtcttagattatcatgttgcttcccaacaacaa |
179 |
Q |
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||||||||| |||||||| | || ||||| |||| ||| |||||| ||||||||||||||||||||| | ||||||| |||||| |
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| T |
14655529 |
ttgtcgtcttctgctcacacaaattaactttttgtccaccatcaaaatctgtttgtcttagattatcatgcttcttcccaccaacaa |
14655443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 381
Target Start/End: Original strand, 9305879 - 9305951
Alignment:
| Q |
308 |
acgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatc |
381 |
Q |
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| T |
9305879 |
acgacctctttaactaaggt-ttaaggttggccaataaactcataaggaattaatttcccttctagtggagatc |
9305951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 31394047 - 31394015
Alignment:
| Q |
313 |
ctctttgactagggtcttaaggttgggcagtaa |
345 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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| T |
31394047 |
ctctttgactagggtcttaaggttgggaagtaa |
31394015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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