View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11833_low_1 (Length: 829)
Name: NF11833_low_1
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 720; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 11 - 811
Target Start/End: Complemental strand, 30760067 - 30759267
Alignment:
| Q |
11 |
cagagatttgtggacttttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgtatcttggctcaggactttacttt |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30760067 |
cagagatttgtggacctttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgtatcttggctcaggactttacttt |
30759968 |
T |
|
| Q |
111 |
gagtttcatatcaaattaatcatttgtaattgaaactactctaatttaatacccataagtgaagattgcaataggaagataaaaaggaacaactacttgc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30759967 |
gagtttcatatcaaattaatcatttgtaactgaaactactctaatttattacccataagtgaagatttcaataggaagataaaaaggaacaactacttgc |
30759868 |
T |
|
| Q |
211 |
aacgtcaggtcttacaaccaaaataccctcaaacttttggcatatcgacagtggtgccacacaccacatgacttatgatcgaaactttttcaaagagctc |
310 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30759867 |
aatgtcaggtcttacaaccaaaataccctcaaacttttggcatatcgacagtggtgccacacaccacatgacttatgatcgaaactttttcaaagagctc |
30759768 |
T |
|
| Q |
311 |
aacaaaactgctatttcttataactttatagttgcgaatggagcacctattgaggtagaaggcatcggaacaattacaattagaaatcgctcaggtttga |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
30759767 |
aacaaaactgctatttcttataactttatagttgcgaatggagcacctattgaggtagaaggcattggaacaattacaattagaaatcactcaggtttga |
30759668 |
T |
|
| Q |
411 |
aactaattttgaatgttttatatgttccaaatcttacttcaagtgttttaagtgttcctcagttgttggaggaaggcttccatgtgttttttatacataa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30759667 |
aactaattttgaatgttttatatgttcccaatcttacttcaagtgttttaagtgttcctcagttgttggaggaaggcttccatgtgttttttatacataa |
30759568 |
T |
|
| Q |
511 |
agcttgtttcattaaacatcaaaataacaaagaagtcatcaaaattcagatggaatcttggaaatttgtttttgattcaatgatcattgaacaagttact |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30759567 |
agcttgtttcattaaacatcaaaataacaaagaagttatcaaaattcagatggaatcttggaaatttgtttttgattcaatgatcattcaacaagttact |
30759468 |
T |
|
| Q |
611 |
gaggaggataaggataaaaaaggatctgaattcaaaaaagaccaaggtaatgaacatgatttgaagaaagtttgtgttaagagaaagaatggagatgtag |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30759467 |
gaggaggataaggataaaaaaggatctgaattcaaaaaagaccaaggtaatgaacatgatttgaagaaagtttgtgttaagagaaagaatggagatgtag |
30759368 |
T |
|
| Q |
711 |
gtgaagaaccacctccttttaataggaaggtaaataaccacctaaccaccatnnnnnnncaaaacaaagatattgaagctgatggagatctaatgggtct |
810 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
30759367 |
gtgaagaaccaccttcttttaataggaaggtaaataaccacctaacccgcataaaaaaacaaaacaaagatactgaagctgatggagatcttatgggtct |
30759268 |
T |
|
| Q |
811 |
t |
811 |
Q |
| |
|
| |
|
|
| T |
30759267 |
t |
30759267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 180 - 811
Target Start/End: Complemental strand, 30749643 - 30749012
Alignment:
| Q |
180 |
aataggaagataaaaaggaacaactacttgcaacgtcaggtcttacaaccaaaataccctcaaacttttggcatatcgacagtggtgccacacaccacat |
279 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30749643 |
aataggaagagaaaaaggaacaactacttgcaatgtcaggtcttacaaccaaaataccctcaaacttttggtatatcgacagtggtgccacacaccacat |
30749544 |
T |
|
| Q |
280 |
gacttatgatcgaaactttttcaaagagctcaacaaaactgctatttcttataactttatagttgcgaatggagcacctattgaggtagaaggcatcgga |
379 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||||||||| |||||||| |||| ||||||||| |||||||||||| ||||||||||||||| | ||| |
|
|
| T |
30749543 |
gacttatgatcgaagccttttcaaagagcttaacaaaactattatttcttgtaacattatagttgggaatggagcacccattgaggtagaaggctttgga |
30749444 |
T |
|
| Q |
380 |
acaattacaattagaaatcgctcaggtttgaaactaattttgaatgttttatatgttccaaatcttacttcaagtgttttaagtgttcctcagttgttgg |
479 |
Q |
| |
|
||| ||||||||| | ||| |||||||||||||||||||||||||||||| |||||||| || |||||||||||| ||||||| |||||||| ||||||| |
|
|
| T |
30749443 |
acagttacaattaaacatcactcaggtttgaaactaattttgaatgttttttatgttcccaaacttacttcaagtcttttaagcgttcctcaattgttgg |
30749344 |
T |
|
| Q |
480 |
aggaaggcttccatgtgttttttatacataaagcttgtttcattaaacatcaaaataacaaagaagtcatcaaaattcagatggaatcttggaaatttgt |
579 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
30749343 |
aggaaggataccatgtgttttttatacataattcttgtgagattaaacatcaaaacaacaaagaagttatcaaaattcagatggaatccaagaaatttgt |
30749244 |
T |
|
| Q |
580 |
ttttgattcaatgatcattgaacaagttactgaggaggataaggataaaaaaggatctgaattcaaaaaagaccaaggtaatgaacatgatttgaagaaa |
679 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
30749243 |
tttagattcaatgatcattgaacaagttactgatcaggataaggataagaaaggatctgaattcaaaaaagaccaaggtgatgcacaggatttgaagaaa |
30749144 |
T |
|
| Q |
680 |
gtttgtgttaagagaaagaatggagatgtaggtgaagaaccacctccttttaataggaaggtaaataaccacctaaccaccatnnnnnnncaaaacaaag |
779 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| | ||||| ||||||| |||| |||||||||| |
|
|
| T |
30749143 |
gtttgtgttaagagaaagaatgaagatgtaggtgaagaaccaccttcttttattaggaaggtgattaacctcctaacccccataaaaaaacaaaacaaag |
30749044 |
T |
|
| Q |
780 |
atattgaagctgatggagatctaatgggtctt |
811 |
Q |
| |
|
|| | ||| |||||| ||||||||||||||| |
|
|
| T |
30749043 |
gtactcaagatgatggtgatctaatgggtctt |
30749012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 30749805 - 30749733
Alignment:
| Q |
13 |
gagatttgtggacttttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgt |
87 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30749805 |
gagatttgtggacctttggtgcaccttggagagag--ttctcacaagcgttcaaagttatgatcatctagggtgt |
30749733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 30749708 - 30749641
Alignment:
| Q |
88 |
atcttggctcaggactttactttgagtttcatatcaaattaatcatttgtaattgaaactactctaat |
155 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||| ||||||||| |||||||| ||||||||||||||| |
|
|
| T |
30749708 |
atcttggcttaggaatttactttgagttgcataacaaattaataatttgtaactgaaactactctaat |
30749641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 193 - 478
Target Start/End: Original strand, 32531346 - 32531628
Alignment:
| Q |
193 |
aaaggaacaactacttgcaacgtcaggtcttacaaccaaaataccctcaaacttttggcatatcgacagtggtgccacacaccacatgacttatgatcga |
292 |
Q |
| |
|
|||||||||||||||||||| |||| | || |||| || ||| ||||| | ||||| |||||||| ||| || ||||| |||||| |||||||| |
|
|
| T |
32531346 |
aaaggaacaactacttgcaatgtcaacttttgcaacaaagcaaccttcaaaatattggctcatcgacagcggttgtacgcaccatatgactcatgatcga |
32531445 |
T |
|
| Q |
293 |
aactttttcaaagagctcaacaaaactgctatttcttataactttatagttgcgaatggagcacctattgaggtagaaggcatcggaacaattacaatta |
392 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||||| || ||| | | |||||| |||| ||||| ||||||||||| || ||| || | ||| |
|
|
| T |
32531446 |
gacttattcaaagagctcaacaaaagtactatttcc---aaagttagaatgttgaatggtgcacacattgaagtagaaggcattgggacagttttagtta |
32531542 |
T |
|
| Q |
393 |
gaaatcgctcaggtttgaaactaattttgaatgttttatatgttccaaatcttacttcaagtgttttaagtgttcctcagttgttg |
478 |
Q |
| |
|
|| || |||||||| |||| ||||| |||||||||||||| ||| || |||| | |||| ||||||||||||||||||||||| |
|
|
| T |
32531543 |
aaagtcactcaggttataaacaaatttcgaatgttttatatgctcctaaacttaatcaaagtcttttaagtgttcctcagttgttg |
32531628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 340 - 438
Target Start/End: Original strand, 19931172 - 19931270
Alignment:
| Q |
340 |
agttgcgaatggagcacctattgaggtagaaggcatcggaacaattacaattagaaatcgctcaggtttgaaactaattttgaatgttttatatgttcc |
438 |
Q |
| |
|
|||||||||||||||| |||| | ||||||||| |||||| || | ||| |||| |||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
19931172 |
agttgcgaatggagcaaatattacagcagaaggcattggaacagttgtatttaagaatcactcaggttcgaaactagttttgaatgttttatatgttcc |
19931270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 340 - 438
Target Start/End: Original strand, 28402216 - 28402314
Alignment:
| Q |
340 |
agttgcgaatggagcacctattgaggtagaaggcatcggaacaattacaattagaaatcgctcaggtttgaaactaattttgaatgttttatatgttcc |
438 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| |||||| || | ||| |||| |||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
28402216 |
agttgcgaatggagcaaaaattacagtagaaggcattggaacagttgtatttaagaatcactcaggttcgaaactagttttgaatgttttatatgttcc |
28402314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 685 - 731
Target Start/End: Complemental strand, 37709153 - 37709107
Alignment:
| Q |
685 |
tgttaagagaaagaatggagatgtaggtgaagaaccacctcctttta |
731 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
37709153 |
tgttaagagaaagaatgaagatgtaagtgaagaaccaccttctttta |
37709107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 29823486 - 29823563
Alignment:
| Q |
13 |
gagatttgtggacttttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgtatctt |
92 |
Q |
| |
|
||||| ||||||| |||||||| |||||| |||| |||||||||| |||||||||||||| || ||||||||| |||| |
|
|
| T |
29823486 |
gagatatgtggacctttggtgcgccttggtgagat--ttctcacaagtgtccaaagttatgaccagctagggtgtgtctt |
29823563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 1608070 - 1608023
Alignment:
| Q |
45 |
gagagttctcacaagcgtccaaagttatgatcatctagggtgtatctt |
92 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||||||| |||| |
|
|
| T |
1608070 |
gagagttctcgcaagcgtccaaagttatgaccagctagggtgtgtctt |
1608023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 20536685 - 20536638
Alignment:
| Q |
45 |
gagagttctcacaagcgtccaaagttatgatcatctagggtgtatctt |
92 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||||||| |||| |
|
|
| T |
20536685 |
gagagttctcgcaagcgtccaaagttatgaccaactagggtgtgtctt |
20536638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University