View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11833_low_14 (Length: 390)
Name: NF11833_low_14
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 7 - 380
Target Start/End: Original strand, 354121 - 354494
Alignment:
| Q |
7 |
tgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactccataattgtgatcattgctggagcagtgttatggat |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
354121 |
tgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactccataattgtgatcattgctggagcagtgttatggat |
354220 |
T |
|
| Q |
107 |
tcttcaacgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttgagtcattgtgtgtgtttgtaatgtctggtcaaggaa |
206 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
354221 |
tcttcaatgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttgagtcattgtgtgtgtttgtaatgtctggtcaaggaa |
354320 |
T |
|
| Q |
207 |
agggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagag |
306 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
354321 |
agggaggtgcaaagtgacatagcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagag |
354420 |
T |
|
| Q |
307 |
gatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatctgtgctgct |
380 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
354421 |
gatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgct |
354494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 189 - 370
Target Start/End: Original strand, 10580686 - 10580866
Alignment:
| Q |
189 |
taatgtctggtcaaggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgag |
288 |
Q |
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| T |
10580686 |
taatgtctggtcaatgaaagggaggtgcaaagtgatattgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgag |
10580785 |
T |
|
| Q |
289 |
aagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagat |
370 |
Q |
| |
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||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
10580786 |
aagagttggtgtgaagaggatcagtgg-tttgatctatgaggaaataagaggactgttgaagattttcttgcagaataagat |
10580866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 202 - 366
Target Start/End: Original strand, 10575299 - 10575462
Alignment:
| Q |
202 |
aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg |
301 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| | | ||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
10575299 |
aggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtg |
10575398 |
T |
|
| Q |
302 |
aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatg |
366 |
Q |
| |
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|| || |||||||| || ||||||||||||| |||||| ||||||||||| |||||| |||||| |
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| T |
10575399 |
aaaagaatcagtgg-attgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatg |
10575462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 10580612 - 10580662
Alignment:
| Q |
76 |
ttgtgatcattgctggagcagtgttatggattcttcaacgcataacaaatg |
126 |
Q |
| |
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|||| ||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
10580612 |
ttgttatcattgttggagcagtgtcatggattcttcaacgcataacaaatg |
10580662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 202 - 366
Target Start/End: Complemental strand, 21584867 - 21584704
Alignment:
| Q |
202 |
aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg |
301 |
Q |
| |
|
||||||||||||||||||| |||| | || |||||| | | ||||||||| ||||| || ||||||||||||||| |||||||||||||||||||||| |
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| T |
21584867 |
aggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattcgtcgattggcgagaagaggtggtgtt |
21584768 |
T |
|
| Q |
302 |
aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatg |
366 |
Q |
| |
|
||||| |||||||| ||| || |||||||||| ||||||||| | |||||||||||| |||||| |
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| T |
21584767 |
aagagaatcagtgg-tttgatttatgaggaaacaagaggagttcttaagattttcttggagaatg |
21584704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 203 - 371
Target Start/End: Original strand, 25084951 - 25085118
Alignment:
| Q |
203 |
ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga |
302 |
Q |
| |
|
|||||||||||||||||| | ||| | ||||||||| | | |||||| || || || || ||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
25084951 |
ggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtga |
25085050 |
T |
|
| Q |
303 |
agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatc |
371 |
Q |
| |
|
|||| |||||||| ||| || ||||| |||| ||||| || |||||||| |||||| |||||| |||| |
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|
| T |
25085051 |
agagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatc |
25085118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 203 - 366
Target Start/End: Complemental strand, 24923729 - 24923567
Alignment:
| Q |
203 |
ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga |
302 |
Q |
| |
|
|||||||||||||||||| | ||| | ||||||||| | | |||||| || || || || ||||| || |||||| ||||||| |||||||||||||| | |
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| T |
24923729 |
ggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtta |
24923630 |
T |
|
| Q |
303 |
agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatg |
366 |
Q |
| |
|
|||| |||||||| ||| |||||||| |||| ||||| || |||||||| |||||| |||||| |
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|
| T |
24923629 |
agagaatcagtgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatg |
24923567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 31825766 - 31825664
Alignment:
| Q |
263 |
aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag |
362 |
Q |
| |
|
||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| ||||| || |||||||| |||||| || |
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| T |
31825766 |
aagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtgg-tttgatctatgaagaaactagaggtgtcttgaagatcttcttggag |
31825668 |
T |
|
| Q |
363 |
aatg |
366 |
Q |
| |
|
|||| |
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|
| T |
31825667 |
aatg |
31825664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 366
Target Start/End: Original strand, 24981958 - 24982121
Alignment:
| Q |
202 |
aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg |
301 |
Q |
| |
|
||||||||||||||||||| | ||| | || |||||| | | |||||| || || || || ||||| || |||||| ||||||| |||||||||||||| |
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|
| T |
24981958 |
aggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtt |
24982057 |
T |
|
| Q |
302 |
aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatg |
366 |
Q |
| |
|
||||| |||||||| ||| || ||||| |||| ||||| || |||||||| |||||| |||||| |
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|
| T |
24982058 |
aagagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatg |
24982121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 358
Target Start/End: Complemental strand, 24920155 - 24920001
Alignment:
| Q |
203 |
ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga |
302 |
Q |
| |
|
|||||||||||||||||| | ||| | || |||||| | | |||||| || || || || ||||| || |||||| ||||||| |||||||||||||||| |
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|
| T |
24920155 |
ggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgcaattcgtcgattggcaagaagaggtggtgtga |
24920056 |
T |
|
| Q |
303 |
agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttctt |
358 |
Q |
| |
|
|||| ||||| || ||| |||||||| |||| ||||| || |||||||| ||||| |
|
|
| T |
24920055 |
agagaatcagcgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttctt |
24920001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 359
Target Start/End: Complemental strand, 24497528 - 24497373
Alignment:
| Q |
203 |
ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga |
302 |
Q |
| |
|
|||||||||||||||||| | ||| | ||||||||| | | ||||| || || || || ||||| || |||||| ||||||| |||||||||||||| | |
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| T |
24497528 |
ggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtta |
24497429 |
T |
|
| Q |
303 |
agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttg |
359 |
Q |
| |
|
|||| |||||||| || |||||||| |||| ||||| || |||||||| |||||| |
|
|
| T |
24497428 |
agagaatcagtgg-attgatctatgaagaaaccagaggtgtcttgaagatcttcttg |
24497373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 366
Target Start/End: Complemental strand, 14261302 - 14261139
Alignment:
| Q |
202 |
aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg |
301 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||| | | ||||| |||||||| ||||||||||||||||| |||| ||||||||||| |||||| |
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|
| T |
14261302 |
aggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtg |
14261203 |
T |
|
| Q |
302 |
aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatg |
366 |
Q |
| |
|
||||| ||||| || || || ||||| |||| | || |||||||||||||||||| |||||| |
|
|
| T |
14261202 |
aagagaatcagcgg-gttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatg |
14261139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 22898466 - 22898540
Alignment:
| Q |
203 |
ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgt |
277 |
Q |
| |
|
|||||||| || |||||| ||||||| ||||| ||| | | ||||| || |||||||||||||||||||||||| |
|
|
| T |
22898466 |
ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgt |
22898540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 22950134 - 22950208
Alignment:
| Q |
203 |
ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgt |
277 |
Q |
| |
|
|||||||| || |||||| ||||||| ||||| ||| | | ||||| || |||||||||||||||||||||||| |
|
|
| T |
22950134 |
ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgt |
22950208 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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