View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_low_16 (Length: 361)
Name: NF11833_low_16
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 13795431 - 13795102
Alignment:
| Q |
16 |
caatttttgcatgacctcacaatgtataataggtaaagtctatgttacaccttcacttcaaatcgaatacatgtttggtgtccgatacacgtccatatct |
115 |
Q |
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| T |
13795431 |
caatttttgcatgacctcacaatgtataataggtaaactctatgttacaccttcacttcaaatcgaatacatgtttggtgtccgatacacgtccatatct |
13795332 |
T |
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| Q |
116 |
atagtgacaaatgtaattacattcaaccattttcttaattattaatgttgtttacatgtcagcattaatgtcgtcctcagtattcgaatttgtgtcagcg |
215 |
Q |
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| T |
13795331 |
atagtgacaaatgtaattacattcaaccattttcttaattattaatgttgtttacatgtcagcattaatgtcgtcctcagtattcgaatttgtgtcagcg |
13795232 |
T |
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| Q |
216 |
ttaatatcgtccttatttgttatacatttacctgcaggctttcatggatggatggcaagcagcctgcaagtccaaagtgcaagccaggcttctaatccct |
315 |
Q |
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| T |
13795231 |
ttaatatcgtccttatttgttatacatttacctgcaggctttcatggatggatggcaagcagcctgcaagtccaaagtgcaagccaggcttctaatccct |
13795132 |
T |
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| Q |
316 |
tcaggaagattccttgtttcttcaatgttc |
345 |
Q |
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| T |
13795131 |
tcaggaagattccttgtttcttcaatgttc |
13795102 |
T |
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