View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_low_25 (Length: 326)
Name: NF11833_low_25
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 35130751 - 35130436
Alignment:
| Q |
1 |
taactaaattttttagtaatagtgaagttagttatttttgcttataattgagacttgtagggtagtttagtgtgagtaaatgacgcatataaaacttatt |
100 |
Q |
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| T |
35130751 |
taactaaattttttagtaatagtgaagttagttatttttgcttataattgagacttgtagggtagtttagtgtgagtaaatgacgcatataaaacttatt |
35130652 |
T |
|
| Q |
101 |
actcgtaacttataattgtaacatagttggcaaagcactcaactttgtaatttggagaccaaggtttgaatcctgcattacataattcattaattttttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35130651 |
actcgtaacttataattgtaacatagttggcaaagcactcaactttgtaatttggagaccaaggtttgaatcctgcattacataattcattaattttttc |
35130552 |
T |
|
| Q |
201 |
acgcaaactcgctcggaaatcatcctcccttaaatttctgcttcaggcctacaaatgtgttggatgcacttatacatctccagtctctattatgatctag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35130551 |
acgcaaactcgctcggaaatcatcctcccttaaatttctgcttcaggcctacaaatgtgttggatgcacttatacatctccagtctctattatgatctag |
35130452 |
T |
|
| Q |
301 |
tttcatattgtgatgt |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
35130451 |
tttcatattgtgatgt |
35130436 |
T |
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