View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_low_26 (Length: 323)
Name: NF11833_low_26
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 24300278 - 24300547
Alignment:
| Q |
18 |
tattttaaaaagaagtattggactgatgggagcagtttcatctagctcaattgtttattgtcagcttgctggatttggagtttagatctcttggtttatg |
117 |
Q |
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| T |
24300278 |
tattttaaaaagaagtattggactgatgggagcagtttcatctagctctattgtttattgtcagcttgctgtatttagagtttagatctcttggtttatg |
24300377 |
T |
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| Q |
118 |
ttgcaagttttcgtagctactctcattgaatgtaggagtaatttcatgggacctttagaagtgcgattgttgattgggcggggtggtgcttggtttgatc |
217 |
Q |
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| T |
24300378 |
ttgcaagttttcgtagctactctcattgaatgtaggagtaatttcatgggaccttcagaagtgcgattggtgattgggcggggtggtgcttggtttgatc |
24300477 |
T |
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| Q |
218 |
ttgttattttaagggggagtgtgctattttgctacatgtttggcaaatagcattgtatttgacttgtgta |
287 |
Q |
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| T |
24300478 |
ttgttattttaagggggagtgtgctattttgctacatgtttggcaaatagcattgtatttgacttgtgta |
24300547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 201 - 304
Target Start/End: Complemental strand, 3654131 - 3654028
Alignment:
| Q |
201 |
tggtgcttggtttgatcttgttattttaagggggagtgtgctattttgctacatgtttggcaaatagcattgtatttgacttgtgtattagtttttaatc |
300 |
Q |
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| T |
3654131 |
tggtgcttggactgatcttgttattttaagcaggagtctgctattttgttacatgtttgggagaaaacattgtatgtgacttgtgtattagtttttgatc |
3654032 |
T |
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| Q |
301 |
tatt |
304 |
Q |
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|||| |
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| T |
3654031 |
tatt |
3654028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 3701289 - 3701350
Alignment:
| Q |
201 |
tggtgcttggtttgatcttgttattttaagggggagtgtgctattttgctacatgtttggca |
262 |
Q |
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|||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
3701289 |
tggtgcttggactgatcttgttattttaaggaggagtatgctactttgctacatgtttggca |
3701350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 3675059 - 3675169
Alignment:
| Q |
201 |
tggtgcttggtttgatcttgttattttaagggggag---tgtgctattttgcta----catgtttggcaaatagcattgtatttgacttgtgtattagtt |
293 |
Q |
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|||||||||| ||||||||||||||| ||| ||| | ||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||| |
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| T |
3675059 |
tggtgcttggactgatcttgttatttttaggaagagtcttttgctattttgctacatgcatgtttggcaaatagcattgtatgtgatttgtttattagtt |
3675158 |
T |
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| Q |
294 |
tttaatctatt |
304 |
Q |
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||| ||||||| |
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| T |
3675159 |
tttgatctatt |
3675169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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