View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11833_low_27 (Length: 311)

Name: NF11833_low_27
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11833_low_27
NF11833_low_27
[»] chr8 (7 HSPs)
chr8 (128-294)||(32914777-32914943)
chr8 (56-114)||(32707921-32707979)
chr8 (56-111)||(16056322-16056377)
chr8 (56-110)||(24307715-24307769)
chr8 (56-114)||(32032848-32032906)
chr8 (56-110)||(30479396-30479450)
chr8 (56-110)||(34307340-34307394)
[»] chr1 (5 HSPs)
chr1 (56-114)||(47748566-47748624)
chr1 (56-114)||(5958918-5958976)
chr1 (56-114)||(41608411-41608469)
chr1 (56-114)||(50590918-50590976)
chr1 (56-114)||(44332289-44332347)
[»] chr7 (5 HSPs)
chr7 (56-114)||(38044321-38044379)
chr7 (56-114)||(8238337-8238395)
chr7 (56-114)||(22343485-22343543)
chr7 (56-112)||(41915865-41915921)
chr7 (56-112)||(7728030-7728086)
[»] chr6 (4 HSPs)
chr6 (56-114)||(4231672-4231730)
chr6 (56-114)||(15989960-15990018)
chr6 (56-114)||(30341278-30341336)
chr6 (56-114)||(15507942-15508000)
[»] chr4 (10 HSPs)
chr4 (56-114)||(19670634-19670692)
chr4 (56-114)||(29547877-29547935)
chr4 (56-114)||(55475315-55475373)
chr4 (56-114)||(29589658-29589716)
chr4 (56-114)||(18924413-18924471)
chr4 (56-114)||(44536664-44536722)
chr4 (56-114)||(50813810-50813868)
chr4 (56-111)||(17983664-17983719)
chr4 (56-114)||(32767082-32767140)
chr4 (56-114)||(47986332-47986389)
[»] chr5 (3 HSPs)
chr5 (56-114)||(2252086-2252144)
chr5 (56-114)||(3921183-3921241)
chr5 (56-114)||(39688815-39688873)
[»] chr3 (3 HSPs)
chr3 (56-114)||(36331247-36331305)
chr3 (56-114)||(42823235-42823293)
chr3 (56-114)||(45058471-45058529)
[»] chr2 (6 HSPs)
chr2 (56-114)||(13365477-13365535)
chr2 (56-114)||(43490245-43490303)
chr2 (56-114)||(45097653-45097711)
chr2 (56-111)||(2997408-2997463)
chr2 (56-114)||(3034901-3034959)
chr2 (56-114)||(38732478-38732536)
[»] scaffold0018 (1 HSPs)
scaffold0018 (56-113)||(152622-152679)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 128 - 294
Target Start/End: Original strand, 32914777 - 32914943
Alignment:
Q  128 ctaatactattctcgacaaggtgtacaaaaactgtaccgctcgcggaaaaaacggaaagatagaaatgtacaaaaagtgccgcaaatataggggacacca 227  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32914777 ctaatactattctcgacaaagtgtacaaaaactgtaccgctcgcggaaaaaacggaaagatagaaatgtacaaaaagtgccgcaaatatacgggacacca 32914876  T
Q  228 aaagccacctccccaaatagaaaacagcacactaaaagcccaaaataggaaattatgatgctaatac 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32914877 aaagccacctccccaaatagaaaacagcacactaaaagcccaaaataggaaattatgatgctaatac 32914943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 32707979 - 32707921
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||||||||||||||| | ||||||||||||||||||| || ||||||||||||    
T  32707979 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 32707921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 16056377 - 16056322
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattt 111  Q
    ||||||||||||||||||||| | ||||||||||||||||||| || |||||||||    
T  16056377 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattt 16056322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 24307769 - 24307715
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacatt 110  Q
    ||||||||||||||||||||| | ||||||||||||||||||| || ||||||||    
T  24307769 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 24307715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 32032848 - 32032906
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    |||||||||| |||||||||| | ||||||||||||||||||| || ||||||||||||    
T  32032848 ctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 32032906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 30479450 - 30479396
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacatt 110  Q
    |||||||||| |||||||||| | ||||||||||||||||||| || ||||||||    
T  30479450 ctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 30479396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 34307340 - 34307394
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacatt 110  Q
    |||||| |||||||||||||| | ||||||||||||||||||| || ||||||||    
T  34307340 ctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 34307394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 47748566 - 47748624
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||    
T  47748566 ctaatacatggggtgtacaagagtgtatgcaattaaaaggtgtctatgtaacattttcc 47748624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 5958976 - 5958918
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||||||||||||||| | |||||||||||||| |||| || ||||||||||||    
T  5958976 ctaatacatggggtgtacaagggtgtatgcaattaaaatgtgtctatgtaacattttcc 5958918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 41608469 - 41608411
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||| ||||||||||| | ||||||||||||||||||| || ||||||||||||    
T  41608469 ctaatacatagggtgtacaagggtgtatgcaattaaaaggtgtttatgtaacattttcc 41608411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 50590976 - 50590918
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||||||||||||||| | ||||||||||||||||| | || ||||||||||||    
T  50590976 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtatctatgtaacattttcc 50590918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 44332347 - 44332289
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||| | ||||||||| | ||||||||||||||||| | || ||||||||||||    
T  44332347 ctaatacatagagtgtacaagggtgtatgcaattaaaaggtatctatgtaacattttcc 44332289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 38044321 - 38044379
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||||||||||||||| | ||||||||||||||||||| || ||||||||||||    
T  38044321 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 38044379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 8238337 - 8238395
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||||||||||||||| | |||||||||||||||| || || ||||||||||||    
T  8238337 ctaatacatggggtgtacaagggtgtatgcaattaaaaggcgtctatgtaacattttcc 8238395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 22343485 - 22343543
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    |||||||||| |||||||||| | ||||||||||||||||||| || ||||||||||||    
T  22343485 ctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 22343543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 41915865 - 41915921
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacatttt 112  Q
    |||||| |||||||||||||| | ||||||||||||||||||| || ||||||||||    
T  41915865 ctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatttt 41915921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 7728030 - 7728086
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacatttt 112  Q
    |||||| ||||||||||||||   ||||||||||||||||||| || ||||||||||    
T  7728030 ctaatatatggggtgtacaaggatgtatgcaattaaaaggtgtctatgtaacatttt 7728086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 4231672 - 4231730
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||||||||||||||| | ||||||||||||||||||| || ||||||||||||    
T  4231672 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 4231730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 15990018 - 15989960
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    |||||| |||||||||||||| | ||||||||||||||||||| || ||||||||||||    
T  15990018 ctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 15989960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 30341336 - 30341278
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    |||||| |||||||||||||| | ||||||||||||||||||| || ||||||||||||    
T  30341336 ctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 30341278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 15508000 - 15507942
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    |||||| ||||||||||||||   ||||||||||||||||||| || ||||||||||||    
T  15508000 ctaatatatggggtgtacaaggatgtatgcaattaaaaggtgtctatgtaacattttcc 15507942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 19670692 - 19670634
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||||||||||||||| | ||||||||||||||||||| || ||||||||||||    
T  19670692 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 19670634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 29547935 - 29547877
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||||||||||||||| | ||||||||||||||||||| || ||||||||||||    
T  29547935 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 29547877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 55475315 - 55475373
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||||||||||||||| | ||||||||||||||||||| || ||||||||||||    
T  55475315 ctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 55475373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 29589716 - 29589658
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    |||||||||| |||||||||||| ||||||||||||||||||| || |||| |||||||    
T  29589716 ctaatacatgaggtgtacaagagtgtatgcaattaaaaggtgtctatgtaatattttcc 29589658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 18924471 - 18924413
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    |||||||||| |||||| ||| | ||||||||||||||||||| || ||||||||||||    
T  18924471 ctaatacatgaggtgtaaaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 18924413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 44536722 - 44536664
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||| ||||||||||||  |||||||||||||| |||| || ||||||||||||    
T  44536722 ctaatacatagggtgtacaagaatgtatgcaattaaaatgtgtctatgtaacattttcc 44536664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 50813868 - 50813810
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    |||||||||| | |||||||| | ||||||||||||||||||| || ||||||||||||    
T  50813868 ctaatacatgagatgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 50813810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 17983719 - 17983664
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattt 111  Q
    |||||||||| |||||||||| | |||||||||||||| |||| || |||||||||    
T  17983719 ctaatacatgaggtgtacaagggtgtatgcaattaaaaagtgtctatgtaacattt 17983664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 32767082 - 32767140
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||| | ||||||||| | |||||||||||||| |||| || ||||||||||||    
T  32767082 ctaatacatagagtgtacaagggtgtatgcaattaaaatgtgtctatgtaacattttcc 32767140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 47986332 - 47986389
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    |||||||||||| |||||||| | |||||||||| |||||||| || ||||||||||||    
T  47986332 ctaatacatgggatgtacaagggtgtatgcaatt-aaaggtgtctatgtaacattttcc 47986389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 2252144 - 2252086
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    |||||| |||||||||||||| | ||||||||||||||||||| || ||||||||||||    
T  2252144 ctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 2252086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 3921241 - 3921183
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    |||||| |||||||||||||| | ||||||||||||||||||| || ||||||||||||    
T  3921241 ctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 3921183  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 39688873 - 39688815
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||| ||||||||||  | ||||||||||||||||||| || ||||||||||||    
T  39688873 ctaatacatagggtgtacaaaggtgtatgcaattaaaaggtgtctatgtaacattttcc 39688815  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 36331305 - 36331247
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||||||||||||||| | ||||||||||||||| ||| || ||||||||||||    
T  36331305 ctaatacatggggtgtacaagggtgtatgcaattaaaagatgtatatgtaacattttcc 36331247  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 42823235 - 42823293
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    |||||||||| |||||||||| | ||||||||||||||||||| || ||||||||||||    
T  42823235 ctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 42823293  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 45058529 - 45058471
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||||||||||||||  | ||||||||||||||||||| || ||||||||||||    
T  45058529 ctaatacatggggtgtacaatggtgtatgcaattaaaaggtgtctatgtaacattttcc 45058471  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 13365477 - 13365535
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||||||||||||||| | | ||||||||||||||||| || ||||||||||||    
T  13365477 ctaatacatggggtgtacaagggtgaatgcaattaaaaggtgtctatgtaacattttcc 13365535  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 43490245 - 43490303
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||| ||||||||||| | ||||||||||||||||||| || ||||||||||||    
T  43490245 ctaatacatagggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 43490303  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 45097711 - 45097653
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    ||||||||| || |||||||||| ||||||||||||||| ||| || ||||||||||||    
T  45097711 ctaatacatcggatgtacaagagtgtatgcaattaaaagatgtttatgtaacattttcc 45097653  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 2997463 - 2997408
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattt 111  Q
    |||||||||| |||||||||| | |||||||||||||| |||| || |||||||||    
T  2997463 ctaatacatgaggtgtacaagggtgtatgcaattaaaaagtgtctatgtaacattt 2997408  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 3034959 - 3034901
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    |||||||||| ||||||| |  | ||||||||||||||||||| || ||||||||||||    
T  3034959 ctaatacatgaggtgtaccaaggtgtatgcaattaaaaggtgtctatgtaacattttcc 3034901  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 38732478 - 38732536
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttcc 114  Q
    |||||||||| | ||||||||   ||||||||||||||||||| || ||||||||||||    
T  38732478 ctaatacatgagatgtacaaggatgtatgcaattaaaaggtgtctatgtaacattttcc 38732536  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 152622 - 152679
Alignment:
Q  56 ctaatacatggggtgtacaagagcgtatgcaattaaaaggtgtgtaagtaacattttc 113  Q
    |||||||||||| |||||||| | ||||||||||||||||||| || |||||||||||    
T  152622 ctaatacatgggatgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttc 152679  T

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