View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11833_low_28 (Length: 310)

Name: NF11833_low_28
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11833_low_28
NF11833_low_28
[»] chr1 (23 HSPs)
chr1 (12-243)||(39843405-39843636)
chr1 (15-177)||(50419390-50419553)
chr1 (18-125)||(39843205-39843313)
chr1 (242-310)||(45323961-45324029)
chr1 (243-310)||(15034411-15034478)
chr1 (239-310)||(21090067-21090138)
chr1 (243-310)||(30054551-30054618)
chr1 (51-171)||(52235087-52235208)
chr1 (243-307)||(20014414-20014478)
chr1 (242-310)||(30370169-30370237)
chr1 (41-167)||(50419669-50419796)
chr1 (267-310)||(4573359-4573402)
chr1 (243-310)||(12025137-12025204)
chr1 (255-297)||(35617948-35617990)
chr1 (104-171)||(10278554-10278621)
chr1 (41-171)||(52233744-52233875)
chr1 (104-171)||(29438936-29439003)
chr1 (255-310)||(33763363-33763418)
chr1 (36-86)||(50419573-50419623)
chr1 (104-177)||(39485065-39485138)
chr1 (41-86)||(39843338-39843383)
chr1 (80-167)||(44291311-44291399)
chr1 (104-160)||(48173765-48173821)
[»] chr4 (19 HSPs)
chr4 (18-177)||(51640960-51641119)
chr4 (241-310)||(46494507-46494576)
chr4 (12-171)||(51641211-51641370)
chr4 (241-310)||(8740402-8740471)
chr4 (242-305)||(39863892-39863955)
chr4 (241-297)||(7173707-7173763)
chr4 (241-308)||(51066447-51066514)
chr4 (242-310)||(50905703-50905771)
chr4 (267-310)||(51714074-51714117)
chr4 (253-307)||(2294822-2294876)
chr4 (253-306)||(32139130-32139183)
chr4 (263-310)||(36192517-36192564)
chr4 (267-309)||(30970494-30970536)
chr4 (104-171)||(33689835-33689902)
chr4 (59-160)||(37336573-37336677)
chr4 (104-171)||(24851939-24852006)
chr4 (104-171)||(34789856-34789923)
chr4 (104-171)||(46737128-46737195)
chr4 (104-171)||(54440577-54440644)
[»] chr5 (15 HSPs)
chr5 (243-309)||(17064279-17064345)
chr5 (12-171)||(25974088-25974250)
chr5 (18-159)||(25973856-25973998)
chr5 (243-310)||(20983112-20983179)
chr5 (104-171)||(22651784-22651851)
chr5 (104-167)||(17260693-17260756)
chr5 (243-310)||(35237132-35237199)
chr5 (104-171)||(38900650-38900717)
chr5 (106-171)||(16753045-16753110)
chr5 (273-310)||(37976532-37976569)
chr5 (104-171)||(4966822-4966889)
chr5 (104-171)||(41834532-41834599)
chr5 (51-119)||(12220622-12220691)
chr5 (254-295)||(41910793-41910834)
chr5 (19-67)||(17260604-17260652)
[»] chr8 (23 HSPs)
chr8 (241-310)||(27881097-27881166)
chr8 (241-310)||(28021278-28021347)
chr8 (243-310)||(19723267-19723334)
chr8 (242-310)||(4840095-4840163)
chr8 (242-309)||(11403956-11404023)
chr8 (244-310)||(28739670-28739736)
chr8 (243-303)||(22711465-22711525)
chr8 (242-309)||(11610235-11610302)
chr8 (243-310)||(32296748-32296815)
chr8 (244-310)||(6097521-6097587)
chr8 (243-295)||(24475120-24475172)
chr8 (104-171)||(9796732-9796799)
chr8 (80-170)||(28876910-28877001)
chr8 (243-310)||(30682795-30682862)
chr8 (104-177)||(28877362-28877435)
chr8 (263-307)||(41553261-41553305)
chr8 (104-171)||(15255859-15255926)
chr8 (104-171)||(28254899-28254966)
chr8 (104-171)||(35427285-35427352)
chr8 (104-171)||(42035778-42035845)
chr8 (64-121)||(2617801-2617859)
chr8 (268-310)||(29767169-29767211)
chr8 (248-293)||(28852040-28852085)
[»] chr2 (29 HSPs)
chr2 (242-307)||(2357187-2357252)
chr2 (242-310)||(7860255-7860323)
chr2 (19-177)||(20495193-20495351)
chr2 (242-310)||(40155995-40156063)
chr2 (243-310)||(6672902-6672969)
chr2 (243-310)||(17136343-17136410)
chr2 (241-307)||(2754163-2754229)
chr2 (242-308)||(44650348-44650414)
chr2 (243-308)||(5039376-5039441)
chr2 (242-310)||(10745341-10745409)
chr2 (52-171)||(3822927-3823047)
chr2 (243-306)||(2098953-2099016)
chr2 (259-310)||(21637869-21637920)
chr2 (243-310)||(25987771-25987838)
chr2 (238-307)||(26690105-26690174)
chr2 (243-308)||(30372791-30372856)
chr2 (104-167)||(2190549-2190612)
chr2 (264-310)||(13047260-13047306)
chr2 (242-303)||(36380248-36380309)
chr2 (80-167)||(28143477-28143565)
chr2 (51-177)||(3824127-3824254)
chr2 (104-171)||(38007956-38008023)
chr2 (104-171)||(42192716-42192783)
chr2 (104-171)||(44219650-44219717)
chr2 (242-288)||(21487105-21487151)
chr2 (273-307)||(36836441-36836475)
chr2 (182-216)||(43864796-43864830)
chr2 (182-216)||(43870477-43870511)
chr2 (280-310)||(45137079-45137109)
[»] chr3 (20 HSPs)
chr3 (242-310)||(7417753-7417821)
chr3 (243-310)||(8400811-8400878)
chr3 (243-310)||(35198721-35198788)
chr3 (243-309)||(48078051-48078117)
chr3 (241-310)||(22855841-22855910)
chr3 (253-310)||(55467965-55468022)
chr3 (80-171)||(36701112-36701204)
chr3 (258-310)||(43334163-43334215)
chr3 (242-310)||(52545276-52545344)
chr3 (104-171)||(27200164-27200231)
chr3 (111-177)||(40489477-40489543)
chr3 (242-307)||(34824511-34824576)
chr3 (104-171)||(14654662-14654729)
chr3 (104-171)||(50901000-50901067)
chr3 (104-171)||(55389611-55389678)
chr3 (104-177)||(2323379-2323452)
chr3 (104-177)||(16689358-16689431)
chr3 (104-177)||(27199702-27199775)
chr3 (273-310)||(50726106-50726143)
chr3 (273-310)||(50786705-50786742)
[»] chr7 (23 HSPs)
chr7 (243-310)||(35109647-35109714)
chr7 (242-310)||(16059462-16059530)
chr7 (242-310)||(21577207-21577275)
chr7 (242-309)||(18117054-18117121)
chr7 (243-310)||(38265346-38265413)
chr7 (242-310)||(11216724-11216792)
chr7 (254-310)||(41151139-41151195)
chr7 (243-310)||(34721790-34721857)
chr7 (254-310)||(45278419-45278475)
chr7 (54-160)||(5445147-5445254)
chr7 (54-160)||(5454191-5454298)
chr7 (243-309)||(38405264-38405330)
chr7 (246-310)||(48176359-48176422)
chr7 (242-297)||(40038620-40038675)
chr7 (64-171)||(39136692-39136799)
chr7 (104-171)||(9394203-9394269)
chr7 (104-171)||(16081772-16081839)
chr7 (104-171)||(27245209-27245276)
chr7 (281-310)||(12472115-12472144)
chr7 (104-173)||(35161275-35161344)
chr7 (104-160)||(33880637-33880693)
chr7 (80-171)||(34595220-34595312)
chr7 (64-171)||(49064040-49064147)
[»] chr6 (9 HSPs)
chr6 (238-310)||(35163859-35163931)
chr6 (241-310)||(2711843-2711912)
chr6 (246-310)||(14496311-14496375)
chr6 (18-125)||(24822905-24823012)
chr6 (255-310)||(19686936-19686991)
chr6 (105-177)||(31242806-31242878)
chr6 (104-177)||(32836007-32836080)
chr6 (104-177)||(35163184-35163257)
chr6 (242-310)||(14505632-14505699)
[»] scaffold0021 (1 HSPs)
scaffold0021 (242-310)||(107800-107868)
[»] scaffold0108 (1 HSPs)
scaffold0108 (104-171)||(15119-15186)
[»] scaffold0007 (2 HSPs)
scaffold0007 (104-171)||(205840-205907)
scaffold0007 (104-171)||(210810-210877)
[»] scaffold0057 (1 HSPs)
scaffold0057 (52-141)||(61064-61154)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 39843405 - 39843636
Alignment:
Q  12 agagaccaaaaaatgtgacacatcaacacttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactacttgttcga 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39843405 agagaccaaaaaatgtgacacatcagcacttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactacttgttcga 39843504  T
Q  112 tttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaataaaaccctactaataatagattaaatacaagatgagatac 211  Q
    |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  39843505 tttgaaaaaggcaggaccaatttcgtgagttggtctaaatgcgaggaccgaaagtgtaataaagccttactaataatagattaaatacaagatgagatac 39843604  T
Q  212 gaaaagtggaaaataaacaatagggctagata 243  Q
    ||||||||||||||||||||||||||||||||    
T  39843605 gaaaagtggaaaataaacaatagggctagata 39843636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 50419553 - 50419390
Alignment:
Q  15 gaccaaaaaatgtgacacatcaacacttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactac-ttgttcgatt 113  Q
    |||||||||||||||||||||| |  ||||| |||||||||||   | |||||||||||||| | |||||||||||||| | ||||||| ||||||||||    
T  50419553 gaccaaaaaatgtgacacatcatcgtttttgcgagctaaaatggatgcaaggaccaaaagtgtaaaaaacatgatagtacaaggactactttgttcgatt 50419454  T
Q  114 tgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaataaaacc 177  Q
    |||||||| ||  | || |||||||||||||| |||||||||||||| |||||| ||| |||||    
T  50419453 tgaaaaagacatgaccatttttgtgagttggtttaaatgcgaggaccaaaagtgcaattaaacc 50419390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 39843313 - 39843205
Alignment:
Q  18 caaaaaatgtgacacatcaacacttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatgga-ctacttgttcgatttga 116  Q
    ||||||||| ||||||||| |  |||||| |||||||||| |||||||||||||||||||| |||||||||||||||| ||| |   |||||||||||||    
T  39843313 caaaaaatgcgacacatcagcgtttttggcagctaaaatgggggtaaggaccaaaagtgcaaaaaacatgatagtatagggaccgttttgttcgatttga 39843214  T
Q  117 aaaaggcag 125  Q
    |||||||||    
T  39843213 aaaaggcag 39843205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 45323961 - 45324029
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||    
T  45323961 taactccaaaggcttggtctagtggtaaaacgacaggtcttgaatccgagagaacctgggttccagccc 45324029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 15034411 - 15034478
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  15034411 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgaaagaacccaggttcgagccc 15034478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 21090067 - 21090138
Alignment:
Q  239 agataactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||    
T  21090067 agataattccaaaggcttggtctagtggtaaaatgacaggtcttgaattcgagagaattcgggttcgagccc 21090138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 30054618 - 30054551
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| ||||||||||||||||||| | || |||||||||||||||||||||||||||||||||    
T  30054618 aactccaaaggcttggtctagtggtaaaaagtcaagtcttgaatccgagagaacccgggttcgagccc 30054551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 52235087 - 52235208
Alignment:
Q  51 taaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactactt-gttcgatttgaaaaaggcagaatcaattttgtgagttggtctaa 149  Q
    |||||||||||| |||||||||| ||||  ||||||||||||||| ||||| ||| |||||||||||||| ||||| |||| ||| ||||||||||  ||    
T  52235087 taaaatgagggttaggaccaaaattgcaagaaacatgatagtatagggactgcttcgttcgatttgaaaagggcaggatcagtttcgtgagttggttaaa 52235186  T
Q  150 atgcgaggaccgaaagtgtaat 171  Q
    ||  ||||| | ||||||||||    
T  52235187 atctgaggatcaaaagtgtaat 52235208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 20014414 - 20014478
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgag 307  Q
    |||||||||  |||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  20014414 aactccaaagtcttggtctagtggtaaaaagacagatcttgaatccgagagaacccgggttcgag 20014478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 30370237 - 30370169
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||| ||||||||||||||||||| |||| || |||||| |||||||| ||||||||||||||    
T  30370237 taactccaaaggcttggtctagtggtaaaaagacaagttttgaattcgagagaatccgggttcgagccc 30370169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 50419669 - 50419796
Alignment:
Q  41 ttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatgga-ctacttgttcgatttgaaaaaggcagaatcaattttgtga 139  Q
    |||| |||||||||||   |||||  |||||||||||| |||||||||||||| | ||| |   |||||| |||| |||||||||| | |||||| ||||    
T  50419669 tttttggagctaaaattgaggtaaaaaccaaaagtgcaaaaaacatgatagtacagggaccgttttgttcaattttaaaaaggcaggaccaatttcgtga 50419768  T
Q  140 gttggtctaaatgcgaggaccgaaagtg 167  Q
    |||||||||||||||| |||| ||||||    
T  50419769 gttggtctaaatgcgatgaccaaaagtg 50419796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 310
Target Start/End: Original strand, 4573359 - 4573402
Alignment:
Q  267 taaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  4573359 taaaaagacaggtcttgaatccgagagaacccgggttcgagccc 4573402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 12025137 - 12025204
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||  ||||||||||||||||||  |||| |||||||| |||||||||| ||||||||||||    
T  12025137 aactccaaagacttggtctagtggtaaaaatacagatcttgaattcgagagaacctgggttcgagccc 12025204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 35617948 - 35617990
Alignment:
Q  255 ttggtctagtggtaaaatgacaggtcttgaatccgagagaacc 297  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  35617948 ttggtctagtggtaaaatgacaggtcttgaatccaagagaacc 35617990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 10278621 - 10278554
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || |||||||| ||||||||||| |||||| |||||| ||||||||||    
T  10278621 ttgttcgatttaaaagaggtaggatcaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaat 10278554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 171
Target Start/End: Complemental strand, 52233875 - 52233744
Alignment:
Q  41 ttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactac-ttgttcgatttgaaaaaggcagaatcaattttgtga 139  Q
    |||||| || ||||||| |||| | |||||||| |||| |||||||||||||||| ||||| | |||||||| ||||||| || || | |||||| || |    
T  52233875 ttttggaagataaaatgggggttatgaccaaaattgcaaaaaacatgatagtatagggactgctttgttcgacttgaaaagggtagcaccaatttcgtaa 52233776  T
Q  140 gttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||  |||  |||||||  ||||||||||    
T  52233775 gttggttaaaacccgaggacgaaaagtgtaat 52233744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 29439003 - 29438936
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || | |||||| ||||||||||| |||||| |||||| ||||||||||    
T  29439003 ttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaat 29438936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 33763418 - 33763363
Alignment:
Q  255 ttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||| |||||| |||||||||||||| |||||||| |  |||||||||||    
T  33763418 ttggtctagtagtaaaaagacaggtcttgaattcgagagaatctaggttcgagccc 33763363  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 50419573 - 50419623
Alignment:
Q  36 aacacttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacat 86  Q
    |||| ||||| ||| ||||||| |||||||||||||||||||| |||||||    
T  50419573 aacatttttgagagttaaaatgggggtaaggaccaaaagtgcaaaaaacat 50419623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 39485138 - 39485065
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaataaaacc 177  Q
    ||||||||||||||| ||| || | || ||| ||||| | ||| ||||||||||||| |||||||||| |||||    
T  39485138 ttgttcgatttgaaagaggtaggaccattttcgtgagctagtcaaaatgcgaggaccaaaagtgtaattaaacc 39485065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 39843383 - 39843338
Alignment:
Q  41 ttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacat 86  Q
    |||||| |||||||||| |||||| ||||||||||||| |||||||    
T  39843383 ttttggaagctaaaatgggggtaaagaccaaaagtgcaaaaaacat 39843338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 44291399 - 44291311
Alignment:
Q  80 aaaacatgatagtatatggacta-cttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtg 167  Q
    ||||||||||||| ||||||| |  |||||| |||||||| ||||| || || ||| ||||| ||||| ||||| ||||||| ||||||    
T  44291399 aaaacatgatagtttatggacgattttgttcaatttgaaagaggcataaccattttcgtgagctggtcaaaatgtgaggaccaaaagtg 44291311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 48173821 - 48173765
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggacc 160  Q
    ||||||||||||||| |||||||| || ||||||||  ||||| ||||||| |||||    
T  48173821 ttgttcgatttgaaagaggcagaaccatttttgtgaactggtcaaaatgcgtggacc 48173765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 51641119 - 51640960
Alignment:
Q  18 caaaaaatgtgacacatcaacacttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactac-ttgttcgatttga 116  Q
    ||||||||||||||||||| |  ||||| |||||||| || || ||||||||||||||||| |||||||||||||||||  ||  | ||||||||||| |    
T  51641119 caaaaaatgtgacacatcatcgtttttgagagctaaa-tggggataaggaccaaaagtgcaaaaaacatgatagtatataaaccgctttgttcgatttaa 51641021  T
Q  117 aaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaataaaacc 177  Q
    ||||||||| | |||||||||||||||||||||| ||||  ||| ||| |||||| |||||    
T  51641020 aaaaggcaggaccaattttgtgagttggtctaaaagcgaaaaccaaaaatgtaattaaacc 51640960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 46494576 - 46494507
Alignment:
Q  241 ataactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46494576 ataactccaaaggtttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 46494507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 51641211 - 51641370
Alignment:
Q  12 agagaccaaaaaatgtgacacatcaacacttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactac-ttgttcg 110  Q
    ||||||||||||||||||||||||| |  ||||| |||| |||||| || |||||| |||| ||||| ||||||||| |||||| ||| | | ||||| |    
T  51641211 agagaccaaaaaatgtgacacatcatcgtttttgagagcaaaaatg-ggataaggatcaaaggtgcaaaaaacatgacagtatagggattgctttgtttg 51641309  T
Q  111 atttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    |||| |||||||||| |||||||| ||||||| |||||||||| |||||  ||||||||||    
T  51641310 atttaaaaaaggcaggatcaatttcgtgagtttgtctaaatgcaaggactaaaagtgtaat 51641370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 8740402 - 8740471
Alignment:
Q  241 ataactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  8740402 ataactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagatcccgggttcgagccc 8740471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 39863955 - 39863892
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcg 305  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39863955 taactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcg 39863892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 7173763 - 7173707
Alignment:
Q  241 ataactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacc 297  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7173763 ataactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacc 7173707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 51066447 - 51066514
Alignment:
Q  241 ataactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagc 308  Q
    |||||||||||  |||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  51066447 ataactccaaagacttggtctagtggtaaaaagacaggtcttgaatccgagagaactcgggttcgagc 51066514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 50905703 - 50905771
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||| | || |||||||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  50905703 taactccaaaggtttagtctagtggtaaaaagacaggtcttgaatccgagagaatctgggttcgagccc 50905771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 310
Target Start/End: Complemental strand, 51714117 - 51714074
Alignment:
Q  267 taaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  51714117 taaaatgacaggtcttgaatccgagagaacccgggttcgagccc 51714074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 2294876 - 2294822
Alignment:
Q  253 gcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgag 307  Q
    ||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||    
T  2294876 gcttggtctagtggtaaaaagacaggtcttgaattcgagagaactcgggttcgag 2294822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 32139130 - 32139183
Alignment:
Q  253 gcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcga 306  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||    
T  32139130 gcttggtctagtggtaaaaggacaggtcatgaatccgagagaacctgggttcga 32139183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 36192517 - 36192564
Alignment:
Q  263 gtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  36192517 gtggtaaaaagacaggtcttgaattcgagagaacccgggttcgagccc 36192564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 30970536 - 30970494
Alignment:
Q  267 taaaatgacaggtcttgaatccgagagaacccgggttcgagcc 309  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  30970536 taaaatgacaggtcttgaatccgagagaatccgggttcgagcc 30970494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 33689902 - 33689835
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || | |||||||||||||||||| |||||| |||||| ||||||||||    
T  33689902 ttgttcgatttaaaagaggtaggaccaattttgtgagttggtcaaaatgcaaggaccaaaagtgtaat 33689835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 37336573 - 37336677
Alignment:
Q  59 gggtaaggaccaaaagtgca--taaaacatgatagtatatggactactt-gttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcga 155  Q
    |||| |||||||||||| ||  ||||| ||| |||||||||||| |||| ||||||||||||||||  | || | |||| ||||||||||  ||||||||    
T  37336573 gggttaggaccaaaagtacaaataaaaaatggtagtatatggacaactttgttcgatttgaaaaagagataacctatttcgtgagttggttaaaatgcga 37336672  T
Q  156 ggacc 160  Q
    |||||    
T  37336673 ggacc 37336677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 24851939 - 24852006
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || |||||||| ||||||||||| |||||| |||||| ||||| ||||    
T  24851939 ttgttcgatttaaaagaggtaggatcaatttcgtgagttggtcaaaatgcaaggaccaaaagtataat 24852006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 34789856 - 34789923
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || | |||||| ||||||||||| |||||| |||||| ||||||||||    
T  34789856 ttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaat 34789923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 46737128 - 46737195
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || | |||||| ||||||||||| |||||| |||||| ||||||||||    
T  46737128 ttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaat 46737195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 54440644 - 54440577
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || | |||||| ||||||||||| |||||| |||||| ||||||||||    
T  54440644 ttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaat 54440577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 17064279 - 17064345
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagcc 309  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17064279 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagcc 17064345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 25974088 - 25974250
Alignment:
Q  12 agagaccaaaaaatgtgacacatcaacacttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactac-ttgttcg 110  Q
    ||||||||||||||||||||||||| |  ||||| || |||||||| |||||||||||   |||||| ||||||||||| |||| ||| ||| |||||||    
T  25974088 agagaccaaaaaatgtgacacatcatcgtttttgagaactaaaatgggggtaaggacc---agtgcaaaaaacatgatactatagggattactttgttcg 25974184  T
Q  111 atttgaaaaaggcagaatcaattttgtga-----gttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||||||| | || ||| ||||     |||||| |||||||||||||| ||||||||||    
T  25974185 atttgaaaaaggcaggaccattttcgtgagttacgttggtttaaatgcgaggaccaaaagtgtaat 25974250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 25973998 - 25973856
Alignment:
Q  18 caaaaaatgtgacacatcaacacttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggact-acttgttcgatttga 116  Q
    ||||||||| ||||||||| || ||||||||| |||||||| | || |||||||||||| | |||||||||||||||  |||||   |||||||||| ||    
T  25973998 caaaaaatgcgacacatcagcatttttgggagttaaaatgaagttatggaccaaaagtgaaaaaaacatgatagtatggggactgttttgttcgattcga 25973899  T
Q  117 aaaaggcagaatcaattttgtgagttggtctaaatgcgaggac 159  Q
    ||||||||  | |||||| |||||| |||||||||||||||||    
T  25973898 aaaaggcatgaccaatttcgtgagtcggtctaaatgcgaggac 25973856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 20983179 - 20983112
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||    
T  20983179 aactccaaaggcttggtctagtgataaaaagacaggtcttgaatccaagagaatccgggttcgagccc 20983112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 22651784 - 22651851
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    |||||||||||||||||||||||| || ||| ||||| ||||| ||||||||||||  ||||||||||    
T  22651784 ttgttcgatttgaaaaaggcagaaccattttcgtgagctggtcaaaatgcgaggacaaaaagtgtaat 22651851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 17260693 - 17260756
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtg 167  Q
    ||||||||||||||| ||| ||||||| ||| |||| |||||| ||||||||||||| ||||||    
T  17260693 ttgttcgatttgaaagaggtagaatcattttcgtgaattggtcaaaatgcgaggaccaaaagtg 17260756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 35237199 - 35237132
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||| ||| |||||||||||||||||||||| | ||||||||| |||||||| | || |||||||||    
T  35237199 aactctaaaggcttggtctagtggtaaaatgatacgtcttgaattcgagagaatctggattcgagccc 35237132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 38900717 - 38900650
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || |||| ||| ||||||||||| ||||||||||||| ||||||||||    
T  38900717 ttgttcgatttaaaagaggtaggatcattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaat 38900650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 16753045 - 16753110
Alignment:
Q  106 gttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||||| |||||||| || ||| ||||||||||| |||||||| |||| ||| ||||||    
T  16753045 gttcgatttgaaagaggcagaaccattttcgtgagttggtcaaaatgcgatgaccaaaaatgtaat 16753110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 37976532 - 37976569
Alignment:
Q  273 gacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  37976532 gacaggtcttgaatccgagagaacctgggttcgagccc 37976569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 4966889 - 4966822
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| |||||| |  | ||| ||||||||||| ||||||||||||| ||||||||||    
T  4966889 ttgttcgatttaaaagaggcagtactattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaat 4966822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 41834532 - 41834599
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||| ||||| |||||| | || ||| ||||| ||||| ||||||||||||| ||||||||||    
T  41834532 ttgttcgatctgaaagaggcaggaccattttcgtgagctggtcaaaatgcgaggaccaaaagtgtaat 41834599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 12220622 - 12220691
Alignment:
Q  51 taaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggact-acttgttcgatttgaaaa 119  Q
    |||||||||||| |||| ||||| ||||  ||||||||||||||| |||||   ||||||||||||||||    
T  12220622 taaaatgagggttaggatcaaaattgcaagaaacatgatagtatagggactgttttgttcgatttgaaaa 12220691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 41910793 - 41910834
Alignment:
Q  254 cttggtctagtggtaaaatgacaggtcttgaatccgagagaa 295  Q
    |||| ||||||||||||| ||||||||||||||| |||||||    
T  41910793 cttgctctagtggtaaaaagacaggtcttgaatctgagagaa 41910834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 17260604 - 17260652
Alignment:
Q  19 aaaaaatgtgacacatcaacacttttgggagctaaaatgagggtaagga 67  Q
    |||||||| |||||||||||| |||||| ||| |||||| |||||||||    
T  17260604 aaaaaatgcgacacatcaacatttttggaagcaaaaatgggggtaagga 17260652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 27881166 - 27881097
Alignment:
Q  241 ataactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27881166 ataactccaaaggcttggtctagtggtaaaatgacaggtcttgaatctgagagaacccgggttcgagccc 27881097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 28021347 - 28021278
Alignment:
Q  241 ataactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28021347 ataactccaaaggcttggtctagtggtaaaatgacaggtcttgaatctgagagaacccgggttcgagccc 28021278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 19723267 - 19723334
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19723267 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 19723334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 4840095 - 4840163
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||| ||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||    
T  4840095 taactccaaaggcttggtctagtggtaaaaagataggttttgaatccgagagaacccgggttcgagccc 4840163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 11403956 - 11404023
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagcc 309  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  11403956 taactccaaagacttggtctagtggtaaaatgacaggtcttgaattcgagagaacctgggttcgagcc 11404023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 28739736 - 28739670
Alignment:
Q  244 actccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||| |||||||||||||||||||||||||||||||||| | |||||||| |||||| |||||    
T  28739736 actccaaaggcttggtctagtggtaaaatgacaggtcttgaattctagagaacctgggttcaagccc 28739670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 22711465 - 22711525
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggtt 303  Q
    ||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  22711465 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaactcgggtt 22711525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 11610235 - 11610302
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagcc 309  Q
    |||||||||| | ||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||    
T  11610235 taactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagatctcggattcgagcc 11610302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 32296815 - 32296748
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| | ||||||||||||||||| ||||||||||||||  |||||||||||||||| |||||    
T  32296815 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatttgagagaacccgggttcaagccc 32296748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 6097521 - 6097587
Alignment:
Q  244 actccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||| |||||||||  |||||||| |||||||||||||| |||||||| ||| ||||||||||    
T  6097521 actccaaaagcttggtcttatggtaaaaagacaggtcttgaattcgagagaatccgagttcgagccc 6097587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 24475172 - 24475120
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaa 295  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||||| ||||    
T  24475172 aactccaaaggcttggtctagtagtaagatgacaggtcttgaatccgatagaa 24475120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 9796799 - 9796732
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || | |||||||||||||||||| |||||| |||||| ||||||||||    
T  9796799 ttgttcgatttaaaagaggtaggaccaattttgtgagttggtcaaaatgcaaggaccaaaagtgtaat 9796732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 28877001 - 28876910
Alignment:
Q  80 aaaacatgatagtatatggactactt-gttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaa 170  Q
    ||||||||||||| || |||| | || ||||||||||||| ||||||||| | ||| ||||| || || ||||||||||||| |||||||||    
T  28877001 aaaacatgatagtttagggacgattttgttcgatttgaaagaggcagaattattttcgtgagctgatcaaaatgcgaggaccaaaagtgtaa 28876910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 30682795 - 30682862
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| |||||||||||||||| |||| ||| |||||||| | ||||| |||| ||||||||||    
T  30682795 aactccaaaggcttggtctagtggtacaatggcagttcttgaattcaagagagcccgtgttcgagccc 30682862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 28877362 - 28877435
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaataaaacc 177  Q
    |||||| |||||||| ||| | || || ||| ||||||||||| ||||||||||||| |||||||||| |||||    
T  28877362 ttgttcaatttgaaagaggtataaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaattaaacc 28877435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 41553261 - 41553305
Alignment:
Q  263 gtggtaaaatgacaggtcttgaatccgagagaacccgggttcgag 307  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||    
T  41553261 gtggtaaaatgataggtcttgaattcgagagaacccgagttcgag 41553305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 15255926 - 15255859
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || | |||||| ||||||||||| |||||| |||||| ||||||||||    
T  15255926 ttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaat 15255859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 28254899 - 28254966
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || | |||||| ||||||||||| |||||| |||||| ||||||||||    
T  28254899 ttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaat 28254966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 35427285 - 35427352
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||| ||| ||| ||| |||| || ||| ||||||||||| ||||||||||||| ||||||||||    
T  35427285 ttgttcggtttaaaagaggtagaaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaat 35427352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 42035845 - 42035778
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| |||| || ||| ||||||||||| ||||| ||||||| ||||||||||    
T  42035845 ttgttcgatttaaaagaggtagaaccattttcgtgagttggtcaaaatgtgaggaccaaaagtgtaat 42035778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 2617859 - 2617801
Alignment:
Q  64 aggaccaaaagtgcataaaacatgatagtatatggactac-ttgttcgatttgaaaaag 121  Q
    ||||| |||| |||| |||||||||||||||| ||||||| |||||| |||||||||||    
T  2617859 aggacgaaaattgcaaaaaacatgatagtataaggactactttgttcaatttgaaaaag 2617801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 29767169 - 29767211
Alignment:
Q  268 aaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||| ||||||||||||||| ||||||||||||| ||||||||    
T  29767169 aaaaagacaggtcttgaatctgagagaacccggggtcgagccc 29767211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 28852040 - 28852085
Alignment:
Q  248 caaatgcttggtctagtggtaaaatgacaggtcttgaatccgagag 293  Q
    |||||| |||||||| ||||||| ||||| ||||||||||||||||    
T  28852040 caaatgtttggtctaatggtaaagtgacatgtcttgaatccgagag 28852085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 2357252 - 2357187
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgag 307  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2357252 taactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgag 2357187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 7860323 - 7860255
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  7860323 taactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacctgggtttgagccc 7860255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 20495351 - 20495193
Alignment:
Q  19 aaaaaatgtgacacatcaacacttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggacta-cttgttcgatttgaa 117  Q
    |||||||| ||||||||| | |||||||||||||||||| ||||||||| |||||||||| |||| |||||||| || |||| |  ||||| ||||| ||    
T  20495351 aaaaaatgcgacacatcagcgcttttgggagctaaaatg-gggtaaggatcaaaagtgcaaaaaatatgatagtttagggacgattttgttagatttaaa 20495253  T
Q  118 aaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaataaaacc 177  Q
    | |||||  |||| ||| ||||||||||| ||||||||| ||| |||||| ||| |||||    
T  20495252 agaggcatgatcattttcgtgagttggtcaaaatgcgagaaccaaaagtgaaattaaacc 20495193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 40155995 - 40156063
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  40155995 taactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaatccgggttcgagccc 40156063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 6672969 - 6672902
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  6672969 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcaagccc 6672902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 17136343 - 17136410
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||    
T  17136343 aactccaaaggcttggtctagtgataaaatgacaggttttgaatctgagagaacccgggttcgagccc 17136410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 2754229 - 2754163
Alignment:
Q  241 ataactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgag 307  Q
    |||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  2754229 ataacttcaaaggcttggtttagtggtaaaatgacaggtcttgaatccgagagaacccggattcgag 2754163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 44650348 - 44650414
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagc 308  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||  |||||||    
T  44650348 taactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgatttcgagc 44650414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 5039376 - 5039441
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagc 308  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||    
T  5039376 aactccaaaggcttggtatagtggtaaaaagacaggtcttgaatccgagagaactcgggttcgagc 5039441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 10745409 - 10745341
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  10745409 taactccaaaggcttggtttagtggtaaaaagacaggtcttgaattcgagagaacccgggtccgagccc 10745341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 3823047 - 3822927
Alignment:
Q  52 aaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactactt-gttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaa 150  Q
    |||||| |||| | |||||||| |||| |||||||||||||||| ||| | ||| ||||| ||| |||| ||||| ||||||||  |||||||||  |||    
T  3823047 aaaatgggggttatgaccaaaattgcaaaaaacatgatagtatagggagtgctttgttcggtttaaaaagggcaggatcaatttcatgagttggttaaaa 3822948  T
Q  151 tgcgaggaccgaaagtgtaat 171  Q
    |||||||||| ||||||||||    
T  3822947 tgcgaggaccaaaagtgtaat 3822927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 2099016 - 2098953
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcga 306  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||    
T  2099016 aactccaaaggcttggtctattggtaaaatgataggtcttgaattcgagagaacccaggttcga 2098953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 21637869 - 21637920
Alignment:
Q  259 tctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  21637869 tctagtggtaaaatgataggtcttgaattcgagagaacccgggtttgagccc 21637920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 25987838 - 25987771
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| ||||| |  | |||||||| |||||||||||||||||||||||| |||||||||||||    
T  25987838 aactccaaaggcttgatacaatggtaaaaagacaggtcttgaatccgagagaactcgggttcgagccc 25987771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 26690105 - 26690174
Alignment:
Q  238 tagataactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgag 307  Q
    |||| ||||||||| ||||||||||||||||||| ||||||| || ||| |||||||| | |||||||||    
T  26690105 tagaaaactccaaaggcttggtctagtggtaaaaagacaggttttaaattcgagagaatctgggttcgag 26690174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 30372856 - 30372791
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagc 308  Q
    ||||||||| | ||||||||||||||||| || ||||||||||| ||||||| || ||||||||||    
T  30372856 aactccaaaggtttggtctagtggtaaaaagataggtcttgaattcgagagatcctgggttcgagc 30372791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 2190549 - 2190612
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtg 167  Q
    |||||||||||||||||||||| | |||||| ||||| ||||| |||||||| |||| ||||||    
T  2190549 ttgttcgatttgaaaaaggcaggaccaatttcgtgagctggtcaaaatgcgatgaccaaaagtg 2190612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 13047306 - 13047260
Alignment:
Q  264 tggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||| |||||||||||||| |||||||| ||||||||||||||    
T  13047306 tggtaaaaagacaggtcttgaattcgagagaatccgggttcgagccc 13047260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 36380309 - 36380248
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggtt 303  Q
    ||||| |||| ||||||||||||||||||  |||||||||||||| ||||| ||| ||||||    
T  36380309 taacttcaaaggcttggtctagtggtaaacagacaggtcttgaattcgagaaaactcgggtt 36380248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 28143477 - 28143565
Alignment:
Q  80 aaaacatgatagtatatggactactt-gttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtg 167  Q
    ||||||||||||| || |||| | || ||||||||||||| |||||| | || ||| ||||| ||||| ||||||||||||| ||||||    
T  28143477 aaaacatgatagtttagggacgattttgttcgatttgaaagaggcaggaccattttcgtgagctggtcaaaatgcgaggaccaaaagtg 28143565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 3824127 - 3824254
Alignment:
Q  51 taaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactactt-gttcgatttgaaaaaggcagaatcaattttgtgagttggtctaa 149  Q
    ||||||| |||| || || |||| |||| |||||||||||| ||||| |||  || ||||||||| |||| ||||  | |||||| ||||||||||  ||    
T  3824127 taaaatgggggttagaactaaaattgcaaaaaacatgatagcatatgaactgttttgttcgatttaaaaagggcatgaccaatttcgtgagttggttaaa 3824226  T
Q  150 atgcgaggaccgaaagtgtaataaaacc 177  Q
    |||||| |||| ||||| |||| |||||    
T  3824227 atgcgatgaccaaaagtataattaaacc 3824254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 38008023 - 38007956
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || | |||||| ||||||||||| |||||| |||||| ||||||||||    
T  38008023 ttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaat 38007956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 42192716 - 42192783
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || | || ||| ||||||||||| ||||||||||||| ||||||||||    
T  42192716 ttgttcgatttaaaagaggtaggaccattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaat 42192783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 44219717 - 44219650
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||||||| || |||| |||||||||||| || |||||  |||||| ||||||||||    
T  44219717 ttgttcgatttaaaaaaggtaggatcatttttgtgagttgatcaaaatggaaggaccaaaagtgtaat 44219650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 21487105 - 21487151
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatcc 288  Q
    |||||||||| | || ||| |||||||||||||||||||||||||||    
T  21487105 taactccaaaggtttagtcaagtggtaaaatgacaggtcttgaatcc 21487151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 307
Target Start/End: Complemental strand, 36836475 - 36836441
Alignment:
Q  273 gacaggtcttgaatccgagagaacccgggttcgag 307  Q
    ||||||||||||||||||||||||||| |||||||    
T  36836475 gacaggtcttgaatccgagagaacccgagttcgag 36836441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 43864830 - 43864796
Alignment:
Q  182 taataatagattaaatacaagatgagatacgaaaa 216  Q
    |||||||||||| ||||||||||||||||||||||    
T  43864830 taataatagattcaatacaagatgagatacgaaaa 43864796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 43870511 - 43870477
Alignment:
Q  182 taataatagattaaatacaagatgagatacgaaaa 216  Q
    |||||||||||| ||||||||||||||||||||||    
T  43870511 taataatagattcaatacaagatgagatacgaaaa 43870477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 310
Target Start/End: Complemental strand, 45137109 - 45137079
Alignment:
Q  280 cttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||||||||||||||||||||||||    
T  45137109 cttgaatccgagagaacccgggttcgagccc 45137079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 7417753 - 7417821
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7417753 taactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 7417821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 8400811 - 8400878
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8400811 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 8400878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 35198721 - 35198788
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35198721 aacttcaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 35198788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 48078117 - 48078051
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagcc 309  Q
    |||| |||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  48078117 aacttcaaaggcttggtctagtggtaaaatgacaggtcttgaattcgagagaactcgggttcgagcc 48078051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 22855841 - 22855910
Alignment:
Q  241 ataactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||||| | ||||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||    
T  22855841 ataactccaaaggtttggtctagtggtaaaaagacaggtcttaaattcgagagaacccaggttcgagccc 22855910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 55467965 - 55468022
Alignment:
Q  253 gcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||    
T  55467965 gcttggtctagtggtaaaatgacatgtcttgaattcgagagaatccgggttcgagccc 55468022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 36701204 - 36701112
Alignment:
Q  80 aaaacatgatagtatatggactactt-gttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||||| ||||||| | || ||||||||||||| |||||  |||| ||| |||||||| || ||||||||||||| ||||||||||    
T  36701204 aaaacatgatagtttatggacgattttgttcgatttgaaagaggcatgatcattttcgtgagttgatcaaaatgcgaggaccaaaagtgtaat 36701112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 43334215 - 43334163
Alignment:
Q  258 gtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||| |||||||||||| || ||||||||||||||||||| ||||||||||    
T  43334215 gtctagaggtaaaatgacaagttttgaatccgagagaacccgagttcgagccc 43334163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 52545276 - 52545344
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||| ||| | ||||||| ||| |||||||||||||||||||||||||| ||  |||||||||||||    
T  52545276 taactcgaaaggtttggtctggtgataaaatgacaggtcttgaatccgagaaaattcgggttcgagccc 52545344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 27200164 - 27200231
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||||||| |||||||| || ||| ||||| ||||| |||||| |||||| ||||||||||    
T  27200164 ttgttcgatttgaaagaggcagaaccattttcgtgagctggtcaaaatgcaaggaccaaaagtgtaat 27200231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 40489543 - 40489477
Alignment:
Q  111 atttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaataaaacc 177  Q
    ||||||||||||||| |||||||||||||||||||  |||| |||||| | |||||| ||| |||||    
T  40489543 atttgaaaaaggcaggatcaattttgtgagttggttaaaatacgaggatcaaaagtgcaattaaacc 40489477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 34824511 - 34824576
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgag 307  Q
    ||||||||||   ||||||||||||||||| || || ||||||||||||||||||| | |||||||    
T  34824511 taactccaaagatttggtctagtggtaaaaagatagatcttgaatccgagagaacctgagttcgag 34824576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 14654662 - 14654729
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| |||  |||||| ||||||||||| |||||| |||||| ||||||||||    
T  14654662 ttgttcgatttaaaagaggtagagccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaat 14654729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 50901000 - 50901067
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    |||||||||||| || ||||||   || ||||||||| ||||| ||||||||||||| ||||||||||    
T  50901000 ttgttcgatttgtaagaggcagggccatttttgtgagctggtcaaaatgcgaggaccaaaagtgtaat 50901067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 55389678 - 55389611
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||||||| || | || ||| ||||||||||| ||||| ||||||| ||||||||||    
T  55389678 ttgttcgatttaaaaaaggtaggaccattttcgtgagttggtcgaaatgggaggaccaaaagtgtaat 55389611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 2323452 - 2323379
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaataaaacc 177  Q
    ||||||||||||||| |||||| || | ||||||||  ||||| ||||||||||||  ||| |||||| |||||    
T  2323452 ttgttcgatttgaaagaggcagtataatttttgtgaactggtcaaaatgcgaggacaaaaaatgtaattaaacc 2323379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 16689431 - 16689358
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaataaaacc 177  Q
    ||||||||||| ||| ||| || | |||||| ||||||||||| |||||| |||||| ||| |||||| |||||    
T  16689431 ttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgctaggaccaaaactgtaattaaacc 16689358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 27199775 - 27199702
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaataaaacc 177  Q
    ||||||||||||||| |||||  | || ||| ||||| ||||| ||||||||||||| ||| |||||| |||||    
T  27199775 ttgttcgatttgaaagaggcatgaccattttcgtgagctggtcaaaatgcgaggaccaaaaatgtaattaaacc 27199702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 50726143 - 50726106
Alignment:
Q  273 gacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||||||||||||||||  |||||||||||||    
T  50726143 gacaggtcttgaatccgagagaattcgggttcgagccc 50726106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 50786705 - 50786742
Alignment:
Q  273 gacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||||||||||||||||  |||||||||||||    
T  50786705 gacaggtcttgaatccgagagaattcgggttcgagccc 50786742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 35109647 - 35109714
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35109647 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 35109714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 16059530 - 16059462
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16059530 taactccaaaggcttggactagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 16059462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 21577275 - 21577207
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21577275 taacttcaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 21577207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 18117121 - 18117054
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagcc 309  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18117121 taactccaaaggcttgttctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagcc 18117054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 38265413 - 38265346
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  38265413 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacctgggttcgagccc 38265346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 11216724 - 11216792
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||| | |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  11216724 taactccaaaggtttggtctagtggtaaagtgacaggtcttgaatctgagagaacccgggttcgagccc 11216792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 41151139 - 41151195
Alignment:
Q  254 cttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41151139 cttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccc 41151195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 34721790 - 34721857
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||    
T  34721790 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccggattcaagccc 34721857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 45278419 - 45278475
Alignment:
Q  254 cttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||||||||||| || ||||||||||||||||| |||||||||||||||||    
T  45278419 cttggtctagtggtaaaaagataggtcttgaatccgagataacccgggttcgagccc 45278475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 5445254 - 5445147
Alignment:
Q  54 aatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactactt-gttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatg 152  Q
    |||| |||| ||||| |||| || | |||||||||||||| ||||||| ||| |||| ||||||||||||||  | || ||||||||||||||| |||||    
T  5445254 aatgggggttaggactaaaattgtaaaaaacatgatagtacatggactgctttgttcaatttgaaaaaggcaagaccagttttgtgagttggtcaaaatg 5445155  T
Q  153 cgaggacc 160  Q
    ||| ||||    
T  5445154 cgatgacc 5445147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 5454298 - 5454191
Alignment:
Q  54 aatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactactt-gttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatg 152  Q
    |||| |||| ||||| |||| || | |||||||||||||| ||||||| ||| |||| ||||||||||||||  | || ||||||||||||||| |||||    
T  5454298 aatgggggttaggactaaaattgtaaaaaacatgatagtacatggactgctttgttcaatttgaaaaaggcaagaccagttttgtgagttggtcaaaatg 5454199  T
Q  153 cgaggacc 160  Q
    ||| ||||    
T  5454198 cgatgacc 5454191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 38405330 - 38405264
Alignment:
Q  243 aactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagcc 309  Q
    |||| |||| |||| |||||||||||||| |||||||||||||||||||||||  || |||||||||    
T  38405330 aacttcaaaggcttcgtctagtggtaaaaagacaggtcttgaatccgagagaattcgagttcgagcc 38405264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 48176359 - 48176422
Alignment:
Q  246 tccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||| |||||||||| |||||||| ||||| |||| |||||||||||| ||||||||||||||    
T  48176359 tccaaaggcttggtcta-tggtaaaaagacagatcttaaatccgagagaatccgggttcgagccc 48176422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 40038620 - 40038675
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacc 297  Q
    ||||||||||  |||| ||||||||||||| ||||||||||||||| |||||||||    
T  40038620 taactccaaagacttgatctagtggtaaaaagacaggtcttgaatctgagagaacc 40038675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 39136799 - 39136692
Alignment:
Q  64 aggaccaaaagtgcataaaacatgatagtatatggactactt-gttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccga 162  Q
    ||||| ||||||||||||| ||||||||| || |||| | || ||||||||||||| || ||||| || ||| ||||| ||||| |||||| |||| | |    
T  39136799 aggactaaaagtgcataaa-catgatagtttagggacgattttgttcgatttgaaagagtcagaaccattttcgtgagctggtcaaaatgcaaggatcaa 39136701  T
Q  163 aagtgtaat 171  Q
    |||||||||    
T  39136700 aagtgtaat 39136692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 9394203 - 9394269
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||||||||||| || | || ||||||||| ||||| |||||||| |||| ||||||||||    
T  9394203 ttgttcgatttgaaaaaggtaggaccatttttgtgagctggtcaaaatgcga-gaccaaaagtgtaat 9394269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 16081772 - 16081839
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || |||||||| ||||||||||| |||||| |||||| || |||||||    
T  16081772 ttgttcgatttaaaagaggtaggatcaatttcgtgagttggtcaaaatgcaaggaccaaaggtgtaat 16081839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 27245276 - 27245209
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||| ||| ||| || | |||||| ||||||||||| |||||| |||||| ||||||||||    
T  27245276 ttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggaccaaaagtgtaat 27245209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 310
Target Start/End: Original strand, 12472115 - 12472144
Alignment:
Q  281 ttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||||||||||||||||||||||||    
T  12472115 ttgaatccgagagaacccgggttcgagccc 12472144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 35161275 - 35161344
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaataa 173  Q
    ||||||||||| ||| ||| || | |||||  ||||||||||| |||||| |||||| ||||||||||||    
T  35161275 ttgttcgatttaaaagaggtaggaccaattccgtgagttggtcaaaatgcaaggaccaaaagtgtaataa 35161344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 33880693 - 33880637
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggacc 160  Q
    ||||||||||||||| ||||||||  | ||||||||| ||||| |||| ||||||||    
T  33880693 ttgttcgatttgaaagaggcagaacaatttttgtgagctggtcaaaatacgaggacc 33880637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 34595220 - 34595312
Alignment:
Q  80 aaaacatgatagtatatggactactt-gttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||||| || |||| | || ||||||||| ||| | |||| | || ||| ||||||||||| ||||| ||||||| ||||||||||    
T  34595220 aaaacatgatagtttagggacgattttgttcgatttaaaagatgcaggaccattttcgtgagttggtcaaaatgtgaggaccaaaagtgtaat 34595312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 49064147 - 49064040
Alignment:
Q  64 aggaccaaaagtgcataaaacatgatagtatatggacta-cttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccga 162  Q
    ||||| ||||||||| ||||||||||||| ||||||  |  |||||| |||||||| |||||  | || ||| ||||| ||||| |||| |||||||| |    
T  49064147 aggactaaaagtgca-aaaacatgatagtttatggaagattttgttctatttgaaagaggcaataccattttcgtgagctggtcaaaatacgaggaccaa 49064049  T
Q  163 aagtgtaat 171  Q
    |||||||||    
T  49064048 aagtgtaat 49064040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 35163931 - 35163859
Alignment:
Q  238 tagataactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  35163931 tagataacttcaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaaccagggttcgagccc 35163859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 2711912 - 2711843
Alignment:
Q  241 ataactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  2711912 ataactcgaaaggcttggtctagtggtaaaatgacaggtcttgaatccgatagaacctggattcgagccc 2711843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 14496311 - 14496375
Alignment:
Q  246 tccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  14496311 tccaaaggtttggtctagtggtaaaaagaaaggtcttgaatccgagagaacccgggttcgagccc 14496375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 24823012 - 24822905
Alignment:
Q  18 caaaaaatgtgacacatcaacacttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactac-ttgttcgatttga 116  Q
    |||||||||||| |||||| |  |||||| || |||||||||||||||||||||||||||| ||||||||||| ||||  |||  | |||||||||||||    
T  24823012 caaaaaatgtgatacatcatcgtttttggaagttaaaatgagggtaaggaccaaaagtgca-aaaacatgataatatagagaccgctttgttcgatttga 24822914  T
Q  117 aaaaggcag 125  Q
    |||||||||    
T  24822913 aaaaggcag 24822905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 19686991 - 19686936
Alignment:
Q  255 ttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||||||||||  |||||||||||||| ||||||||| ||||||||||||    
T  19686991 ttggtctagtggtaaaaaaacaggtcttgaatctgagagaacctgggttcgagccc 19686936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 31242878 - 31242806
Alignment:
Q  105 tgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaataaaacc 177  Q
    |||||||||| |||||||||| |||| ||| ||||||||||| ||||||||||  | |||||||||| |||||    
T  31242878 tgttcgatttaaaaaaggcaggatcattttcgtgagttggtcaaaatgcgagggtcaaaagtgtaattaaacc 31242806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 32836080 - 32836007
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaataaaacc 177  Q
    ||||||||||||||| |||||| | |  ||||||||| ||||| |||||| |||| | |||||||||| |||||    
T  32836080 ttgttcgatttgaaagaggcaggaccgtttttgtgagctggtcaaaatgcaaggatcaaaagtgtaattaaacc 32836007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 35163257 - 35163184
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaataaaacc 177  Q
    ||||||||||||||| || ||  | || ||||||||| ||||| ||||||||||||  |||||||||| |||||    
T  35163257 ttgttcgatttgaaagagacaagaccatttttgtgagctggtcaaaatgcgaggactaaaagtgtaattaaacc 35163184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 14505699 - 14505632
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    |||||||||| ||||||||||| |||||||  ||| || |||||||||||||| ||||  |||||||||    
T  14505699 taactccaaaggcttggtctagaggtaaaaaaacaagt-ttgaatccgagagatcccgaattcgagccc 14505632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 107868 - 107800
Alignment:
Q  242 taactccaaatgcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccc 310  Q
    ||||||||||  |||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||    
T  107868 taactccaaagacttggtctagtggtaaaaagacaggtcttgaattcgagagaacccgagttcgagccc 107800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 15186 - 15119
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||||||| ||||||||||| ||| | ||| ||||| |||||||| |||| ||||| ||||    
T  15186 ttgttcgatttgaaagaggcagaatcattttcgcgagctggtcaaaatgcgatgaccaaaagtataat 15119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 205840 - 205907
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||||||| |||||| | || ||| ||||||||||| ||||| ||||||  ||||||||||    
T  205840 ttgttcgatttgaaagaggcaggaccattttcgtgagttggtcaaaatgtgaggactaaaagtgtaat 205907  T

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Target: scaffold0007; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 210810 - 210877
Alignment:
Q  104 ttgttcgatttgaaaaaggcagaatcaattttgtgagttggtctaaatgcgaggaccgaaagtgtaat 171  Q
    ||||||||||||||| |||||| | || |||  |||||||||| ||||| ||||||| ||||||||||    
T  210810 ttgttcgatttgaaagaggcaggaccattttcatgagttggtcaaaatgtgaggaccaaaagtgtaat 210877  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 61154 - 61064
Alignment:
Q  52 aaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactac-ttgttcgatttgaaaaaggcagaatcaattttgtgagt 141  Q
    ||||||||||| | |||||||| |||| ||| |||||||||||| ||||| | |||||| |||| |||| ||||| |||| ||| ||||||    
T  61154 aaaatgagggttatgaccaaaattgcaaaaagcatgatagtatagggactgctttgttctattttaaaatggcaggatcattttcgtgagt 61064  T

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