View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11833_low_3 (Length: 559)

Name: NF11833_low_3
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11833_low_3
NF11833_low_3
[»] chr3 (4 HSPs)
chr3 (19-420)||(11438686-11439087)
chr3 (28-395)||(11317130-11317497)
chr3 (20-368)||(15461178-15461526)
chr3 (481-525)||(11438572-11438616)
[»] chr8 (4 HSPs)
chr8 (19-395)||(27504860-27505236)
chr8 (19-386)||(27498688-27499055)
chr8 (19-384)||(27544313-27544678)
chr8 (19-339)||(27496478-27496798)
[»] scaffold0071 (1 HSPs)
scaffold0071 (20-368)||(666-1014)


Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 11439087 - 11438686
Alignment:
Q  19 gtattaggttattggaaggaaagtttggaaagatcaaacaaggttatgattttgagatttgaagaaatgaaaatgaagcctgattttcatttgaaaaagc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11439087 gtattaggttattggaaggaaagtttggaaagatcaaacaaggttatgtttttgagatttgaagaaatgaaaatgaagcctgattttcatttgaaaaagc 11438988  T
Q  119 ttgctgaatttttggagtgtcctttcactaaagatgaagaatctaaaggggtggttgatgttatattaaatttgtgtagttttgagaagcttagcaactt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11438987 ttgctgaatttttggagtgtcctttcactaaagatgaagaatctaaaggggtggttgatgatatattaaatttgtgtagttttgagaagcttagcaactt 11438888  T
Q  219 ggaggttaataagactgggaaagtgtcatttggtgttgaaaataaagcttattttcgtcgtggccaagttggagatggagaaaagcttctaacaactgaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11438887 ggaggttaataagactgggaaagtgtcatttggtgttgaaaataaagctttttttcgtcgtggccaagttggagatggagaaaagcttctaacaactgaa 11438788  T
Q  319 atgattgagcagttaaacactgtaattgaagagaaattggttaaacatgggtttaatttttagattttgagaaattcaattcaaatatcatcttcttaca 418  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||    
T  11438787 atgattgagcaattaaacactgtaattgaagagaaattggttaaacatggatttaatttttagatttggagaaattcaattcaaatatcatcttgttaca 11438688  T
Q  419 ta 420  Q
    ||    
T  11438687 ta 11438686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 28 - 395
Target Start/End: Complemental strand, 11317497 - 11317130
Alignment:
Q  28 tattggaaggaaagtttggaaagatcaaacaaggttatgattttgagatttgaagaaatgaaaatgaagcctgattttcatttgaaaaagcttgctgaat 127  Q
    ||||||||| |||| ||||||||  || | ||||| ||| |||||| || |||||||||||||||||| ||| ||||| |||||||| |||||||||| |    
T  11317497 tattggaagaaaagcttggaaaggccagagaaggtgatgtttttgaaatatgaagaaatgaaaatgaaacctaatttttatttgaaagagcttgctgagt 11317398  T
Q  128 ttttggagtgtcctttcactaaagatgaagaatctaaaggggtggttgatgttatattaaatttgtgtagttttgagaagcttagcaacttggaggttaa 227  Q
    ||||||||||||| ||| | ||||| |||||||  ||||| |||||||||| |||||||||||||||||||||||||||| | ||||| |||||||| ||    
T  11317397 ttttggagtgtccattctccaaagaagaagaattcaaaggtgtggttgatgatatattaaatttgtgtagttttgagaagttgagcaatttggaggtcaa 11317298  T
Q  228 taagactgggaaagtgtcatttggtgttgaaaataaagcttattttcgtcgtggccaagttggagatggagaaaagcttctaacaactgaaatgattgag 327  Q
    |||||  |||||||  |   ||  | | ||||||||||||| ||| |||| |||  |  |||||||| |  |||| | ||| |||||||||||| |||||    
T  11317297 taagatcgggaaaggttttcttaatatggaaaataaagcttttttccgtcttggtaatattggagattggaaaaatcatctcacaactgaaatggttgag 11317198  T
Q  328 cagttaaacactgtaattgaagagaaattggttaaacatgggtttaatttttagattttgagaaattc 395  Q
    ||| |||||||  |   |||||||||||| || |||||||||||   |||||||||||| ||||||||    
T  11317197 cagataaacaccatcgctgaagagaaatttgtaaaacatgggttgtgtttttagattttaagaaattc 11317130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 20 - 368
Target Start/End: Original strand, 15461178 - 15461526
Alignment:
Q  20 tattaggttattggaaggaaagtttggaaagatcaaacaaggttatgattttgagatttgaagaaatgaaaatgaagcctgattttcatttgaaaaagct 119  Q
    ||||||| || ||||| ||||| ||||||||   | | ||||| ||| ||||||||| ||||||||||||||||||||||  |||| |||||||| || |    
T  15461178 tattaggatactggaaagaaagcttggaaaggcaagagaaggtgatgtttttgagatatgaagaaatgaaaatgaagccttgtttttatttgaaagaggt 15461277  T
Q  120 tgctgaatttttggagtgtcctttcactaaagatgaagaatctaaaggggtggttgatgttatattaaatttgtgtagttttgagaagcttagcaacttg 219  Q
    |||||| ||||||| |||||| ||| | ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  15461278 tgctgagtttttggggtgtccattctccaaagaagaagaatctaaaggagtggttgatgatatattaaatttgtgtagttttgagaagctgagcaacttg 15461377  T
Q  220 gaggttaataagactgggaaagtgtcatttggtgttgaaaataaagcttattttcgtcgtggccaagttggagatggagaaaagcttctaacaactgaaa 319  Q
    ||||| ||||||  ||| ||| |  | | ||| |  |||||||||||||  || ||| ||||| ||||||||||| |  |||  |||||  ||| |||||    
T  15461378 gaggtaaataagtttggaaaattaccgtctggggaagaaaataaagctttcttccgtagtggcaaagttggagattggaaaactcttctctcaattgaaa 15461477  T
Q  320 tgattgagcagttaaacactgtaattgaagagaaattggttaaacatgg 368  Q
    ||||||| | |||||| || ||||| ||| | || |||| |||||||||    
T  15461478 tgattgaacggttaaatacagtaatagaacaaaatttgggtaaacatgg 15461526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 525
Target Start/End: Complemental strand, 11438616 - 11438572
Alignment:
Q  481 gtagatctaatatagggatctgaattatctcatgcactttctctc 525  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  11438616 gtagatctaatatggggatctgaattatctcatgcactttctctc 11438572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 27504860 - 27505236
Alignment:
Q  19 gtattaggttattggaaggaaagtttggaaagatcaaacaaggttatgattttgagatttgaagaaatgaaaatgaagcctgattttcatttgaaaaagc 118  Q
    |||||||| || ||||||||||| ||||||||| |  | ||||||||| |||||| || |||||||||||||||||| ||| |||||  ||||||| ||     
T  27504860 gtattaggatactggaaggaaagcttggaaagaccggagaaggttatgtttttgaaatatgaagaaatgaaaatgaaacctaattttgttttgaaagaga 27504959  T
Q  119 ttgctgaatttttggagtgtcctttcactaaagatgaagaatctaaaggggtggttgatgttatattaaatttgtgtagttttgagaagcttagcaactt 218  Q
    ||||| | ||||||| |||||| ||| |  |||| |||||||| || || |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  27504960 ttgctaagtttttggggtgtccattctccgaagaagaagaatccaatggtgtggttgatgatatattacatttgtgtagttttgagaagcttagcaactt 27505059  T
Q  219 ggaggttaataagactgggaaagtgtcatttggtgttgaaaataa-agcttattttcgtcgtggccaagttggagatggagaaaagcttctaacaactga 317  Q
    |||| | |||||||  |||||| | || |  |   ||||||| || | ||| ||| |||| |||| ||||||||||| |  |||| ||||| |||||| |    
T  27505060 ggagatcaataagaacgggaaaatttcgtcggaaattgaaaacaagaactt-tttccgtcttggcaaagttggagattggaaaaatcttctcacaactaa 27505158  T
Q  318 aatgattgagcagttaaacactgtaattgaagagaaattggttaaacatgggtttaatttttagattttgagaaattc 395  Q
    |||| |||||||||||||||  ||  | ||||||||||| | |||||||||||| | |||||||||||||||||||||    
T  27505159 aatggttgagcagttaaacatagttgtcgaagagaaatttggtaaacatgggttgagtttttagattttgagaaattc 27505236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 27499055 - 27498688
Alignment:
Q  19 gtattaggttattggaaggaaagtttggaaagatcaaacaaggttatgattttgagatttgaagaaatgaaaatgaagcctgattttcatttgaaaaagc 118  Q
    |||||||| |||||||||||||  ||||||||  || | ||||| ||| || | | ||||||||||||||||||||| |||  |||| |||||||||||     
T  27499055 gtattaggatattggaaggaaaacttggaaaggccagagaaggtgatgtttataaaatttgaagaaatgaaaatgaaacctagtttttatttgaaaaaga 27498956  T
Q  119 ttgctgaatttttggagtgtcctttcactaaagatgaagaatctaaaggggtggttgatgttatattaaatttgtgtagttttgagaagcttagcaactt 218  Q
    ||||||| ||| |||  ||||| |||  ||| || |||||||| || ||  || | |||| |||||||||||||||||||||||||||  | ||||||||    
T  27498955 ttgctgagtttctgggttgtccattctttaatgaagaagaatccaagggcatgatcgatgatatattaaatttgtgtagttttgagaacttaagcaactt 27498856  T
Q  219 ggaggttaataagactgggaaagtgtcatttggtgttgaaaataaagcttattttcgtcgtggccaagttggagatggagaaaagcttctaacaactgaa 318  Q
    |||||| || ||||| |  | |||  ||   ||||||||||||||||||| ||||||||||||||||||||||||| |  |||| ||||| ||| |||||    
T  27498855 ggaggtcaacaagaccgtaagagtagcaacaggtgttgaaaataaagctttttttcgtcgtggccaagttggagattggaaaaaccttctcacagctgaa 27498756  T
Q  319 atgattgagcagttaaacactgtaattgaagagaaattggttaaacatgggtttaatttttagatttt 386  Q
    |||||| |||| ||||||||| | |  ||| | ||||||| |||||||||||| | ||||||||||||    
T  27498755 atgattaagcaattaaacactatcaccgaaaataaattgggtaaacatgggttgagtttttagatttt 27498688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 27544313 - 27544678
Alignment:
Q  19 gtattaggttattggaaggaaagtttggaaagatcaaacaaggttatgattttgagatttgaagaaatgaaaatgaagcctgattttcatttgaaaaagc 118  Q
    ||||| || |||||||||||||| ||||||||  |  | ||||| ||| |||||| || |||||||||||||||||| |||  |||| |||||||| ||     
T  27544313 gtattgggatattggaaggaaagcttggaaaggccggagaaggtgatgtttttgaaatatgaagaaatgaaaatgaatcctagtttttatttgaaagaga 27544412  T
Q  119 ttgctgaatttttggagtgtcctttcactaaagatgaagaatctaaaggggtggttgatgttatattaaatttgtgtagttttgagaagcttagcaactt 218  Q
    ||||| | |||||||  ||||| ||| | ||||| |||||||| |||||  ||||||||| |||||||||| | |||||||||||||| || ||||||||    
T  27544413 ttgctaattttttgggttgtccattctccaaagaagaagaatccaaaggtatggttgatgatatattaaatctatgtagttttgagaaactgagcaactt 27544512  T
Q  219 ggaggttaataagactgggaaagtgtcatttggtgttgaaaataaagcttattttcgtcgtggccaagttggagatggagaaaagcttctaacaactgaa 318  Q
    |||||| |||||||| || ||| | || |||| | | ||||| |||   | ||| || |  |||| |||||||||| |  ||||  |||| |||||||||    
T  27544513 ggaggtcaataagacaggaaaactttcttttgatatggaaaacaaatactttttccggctaggccgagttggagattgcaaaaatgttctcacaactgaa 27544612  T
Q  319 atgattgagcagttaaacactgtaattgaagagaaattggttaaacatgggtttaatttttagatt 384  Q
    |||||||||||||| |||||| | | ||||   ||||||| || ||||||||| |  |||||||||    
T  27544613 atgattgagcagttgaacactatcactgaaagtaaattggctacacatgggttgagattttagatt 27544678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 27496798 - 27496478
Alignment:
Q  19 gtattaggttattggaaggaaagtttggaaagatcaaacaaggttatgattttgagatttgaagaaatgaaaatgaagcctgattttcatttgaaaaagc 118  Q
    |||||||| ||||| | ||||||||||||||   || | ||||| ||| |||||| || |||||||  |||||||||||||  |||| |||||||||||     
T  27496798 gtattaggatattgaacggaaagtttggaaatgccagagaaggtgatgtttttgaaatatgaagaagcgaaaatgaagcctagtttttatttgaaaaaga 27496699  T
Q  119 ttgctgaatttttggagtgtcctttcactaaagatgaagaatctaaaggggtggttgatgttatattaaatttgtgtagttttgagaagcttagcaactt 218  Q
    ||||||| |||||||  |||   ||  |||  || |||||||| || ||  ||||||||| | ||||||||||||||||||||||||| ||  |||||||    
T  27496698 ttgctgagtttttgggttgtggattttctattgaagaagaatccaacggcatggttgatgatttattaaatttgtgtagttttgagaatctgggcaactt 27496599  T
Q  219 ggaggttaataagactgggaaagtgtcatttggtgttgaaaataaagcttattttcgtcgtggccaagttggagatggagaaaagcttctaacaactgaa 318  Q
    ||| ||  |||||||  | | | | |||| ||||| |||||||||||||| ||| | |||||| |||||||||||| |  |||| ||||| ||||| |||    
T  27496598 ggaagtcgataagacatgaagaatatcatctggtgatgaaaataaagcttttttccatcgtggacaagttggagattggaaaaatcttctcacaacagaa 27496499  T
Q  319 atgattgagcagttaaacact 339  Q
    |||||||||| ||||||||||    
T  27496498 atgattgagctgttaaacact 27496478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 1014 - 666
Alignment:
Q  20 tattaggttattggaaggaaagtttggaaagatcaaacaaggttatgattttgagatttgaagaaatgaaaatgaagcctgattttcatttgaaaaagct 119  Q
    ||||||| || ||||| ||||| ||||||||   | | ||||| ||| ||||||||| ||||||||||||||||||||||  |||| |||||||| || |    
T  1014 tattaggatactggaaagaaagcttggaaaggcaagagaaggtgatgtttttgagatatgaagaaatgaaaatgaagccttgtttttatttgaaagaggt 915  T
Q  120 tgctgaatttttggagtgtcctttcactaaagatgaagaatctaaaggggtggttgatgttatattaaatttgtgtagttttgagaagcttagcaacttg 219  Q
    |||||| ||||||| |||||| ||| | ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  914 tgctgagtttttggggtgtccattctccaaagaagaagaatctaaaggagtggttgatgatatattaaatttgtgtagttttgagaagctgagcaacttg 815  T
Q  220 gaggttaataagactgggaaagtgtcatttggtgttgaaaataaagcttattttcgtcgtggccaagttggagatggagaaaagcttctaacaactgaaa 319  Q
    ||||| ||||||  ||| ||| |  | | ||| |  |||||||||||||  || ||| ||||| ||||||||||| |  |||  |||||  ||| |||||    
T  814 gaggtaaataagtttggaaaattaccgtctggggaagaaaataaagctttcttccgtagtggcaaagttggagattggaaaactcttctctcaattgaaa 715  T
Q  320 tgattgagcagttaaacactgtaattgaagagaaattggttaaacatgg 368  Q
    ||||||| | |||||| || ||||| ||| | || |||| |||||||||    
T  714 tgattgaacggttaaatacagtaatagaacaaaatttgggtaaacatgg 666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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