View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_low_36 (Length: 284)
Name: NF11833_low_36
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 19989015 - 19988742
Alignment:
| Q |
1 |
acccgacactactcgatttcttcttttatgtcttcccaacaagacaaccacatacgcagacaaattccaccaatttcttcaatttgaacacattcattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19989015 |
acccgacactactcgatttcttcttttatgtcttcctaacaagacaaccacatacacacacaaattccaccaatttcttcaatttgaacacattcattca |
19988916 |
T |
|
| Q |
101 |
tgggttgtccggtctcaaaaaaccttaccatagttgtcaaaaattccgaggaccaccattctaattcttcacaagtttcaaaagctatgtctctcccaat |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19988915 |
tgggttgtccagtctcaaaaaaccttaccatagttgttaaaaattccgaggacaaccattctaattcttcacaagtttcaaaagctatgtctctcccaat |
19988816 |
T |
|
| Q |
201 |
gcctcttgtgcatcatcctccaacaagaaaaggtgatactcatcaccttgtttccctcacctccaccacctatg |
274 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19988815 |
gcctcttgtgcatcaccctccaacaagaaaaggtgatactcatcaccttgtttccctcacctccaccacctatg |
19988742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 280
Target Start/End: Complemental strand, 35420901 - 35420801
Alignment:
| Q |
180 |
aaaagctatgtctctcccaatgcctcttgtgcatcatcctccaacaagaaaaggtgatactcatcaccttgtttccctcacctccaccacctatgcttct |
279 |
Q |
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||||||| |||| || ||||||||||| | ||||| |||||||| | ||||||||| ||||||||||||||||| ||||| ||||| ||||||| |||| |
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| T |
35420901 |
aaaagctttgtcccttacaatgcctcttatccatcaccctccaaccaaaaaaggtgacactcatcaccttgtttcactcacttccactacctatggttct |
35420802 |
T |
|
| Q |
280 |
c |
280 |
Q |
| |
|
| |
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|
| T |
35420801 |
c |
35420801 |
T |
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