View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_low_38 (Length: 277)
Name: NF11833_low_38
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 26446857 - 26446774
Alignment:
| Q |
120 |
ctttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcgtcgtcgttccagattcagcagcttttccctta |
203 |
Q |
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| T |
26446857 |
ctttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcgtcgtcgttccagattcagcagcttttccctta |
26446774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 26446960 - 26446923
Alignment:
| Q |
17 |
aagaagatgaattcaacgttaaaacctaacacaatcat |
54 |
Q |
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| T |
26446960 |
aagaagatgaattcaacgttaaaacctaacacaatcat |
26446923 |
T |
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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 43580034 - 43579951
Alignment:
| Q |
120 |
ctttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcgtcgtcgttccagattcagcagcttttccctta |
203 |
Q |
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| T |
43580034 |
ctttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcgtcgtcgttccagaatcagcaacttttccctta |
43579951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 24749768 - 24749863
Alignment:
| Q |
120 |
ctttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcg----------tcgtcgttccagattcagcagcttttcccttaaa |
205 |
Q |
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| T |
24749768 |
ctttttcacgaggaagaagatgaaagaaacctggattttgtcttggttttcgtcgtcgttcgtcgtcgttccagattcagcagcttttcccttaaa |
24749863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 24749665 - 24749702
Alignment:
| Q |
17 |
aagaagatgaattcaacgttaaaacctaacacaatcat |
54 |
Q |
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| T |
24749665 |
aagaagatgaattcaacgttaaaacctaacacaatcat |
24749702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 43580137 - 43580100
Alignment:
| Q |
17 |
aagaagatgaattcaacgttaaaacctaacacaatcat |
54 |
Q |
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| T |
43580137 |
aagaagatgaattcaacgttaaaatccaacacaatcat |
43580100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 21011572 - 21011655
Alignment:
| Q |
120 |
ctttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcgtcgtcgttccagattcagcagcttttccctta |
203 |
Q |
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| T |
21011572 |
ctttttcgcgaggaagaagatgaaagaaacctggattttgttttcgttttcgtcgtcgttccagaatcagcagcttttccctta |
21011655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 21011488 - 21011525
Alignment:
| Q |
17 |
aagaagatgaattcaacgttaaaacctaacacaatcat |
54 |
Q |
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| T |
21011488 |
aagaagatgaattcaacgttaaaacccaacacaatcat |
21011525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 7338499 - 7338448
Alignment:
| Q |
121 |
tttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcgt |
172 |
Q |
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| T |
7338499 |
tttttcgcgaagaagaagaggaaacaaacctagattttgtcttcgttttcgt |
7338448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 24501740 - 24501810
Alignment:
| Q |
121 |
tttttcgcgaggaagaagatgaaagaaacctggattttgtcttcgttttcgtcgtcgttccagattcagca |
191 |
Q |
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| T |
24501740 |
tttttcgcgaagaagaagagcaaacaaacctgaattttgtcttccttttcgttttcgttcctggttcagca |
24501810 |
T |
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