View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11833_low_39 (Length: 276)

Name: NF11833_low_39
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11833_low_39
NF11833_low_39
[»] chr8 (2 HSPs)
chr8 (16-247)||(36481469-36481687)
chr8 (16-68)||(24788460-24788512)
[»] chr7 (2 HSPs)
chr7 (16-247)||(45854042-45854260)
chr7 (128-201)||(13807771-13807846)
[»] chr3 (2 HSPs)
chr3 (16-247)||(41226543-41226760)
chr3 (129-208)||(33334827-33334907)
[»] chr1 (7 HSPs)
chr1 (16-247)||(45813736-45813954)
chr1 (16-247)||(27068205-27068422)
chr1 (16-247)||(38158253-38158471)
chr1 (93-195)||(37671849-37671951)
chr1 (93-195)||(37704198-37704300)
chr1 (132-247)||(41806371-41806486)
chr1 (19-80)||(41806272-41806333)
[»] chr5 (1 HSPs)
chr5 (101-245)||(6239551-6239695)
[»] chr4 (2 HSPs)
chr4 (106-247)||(2473363-2473503)
chr4 (16-81)||(2473514-2473579)
[»] scaffold2055 (1 HSPs)
scaffold2055 (25-247)||(710-918)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 36481469 - 36481687
Alignment:
Q  16 ttatggttgaaaactaaacaggttaattttgcttgtagttaccacgactggtgtaaccagccgcttctatgcattggttctatgcattgctgttagagtg 115  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||             |||||||| |||||| |||    
T  36481469 ttatggttaaaaactaaacaggttaattttgcttatagttaccacgactggtgtaaccagccgcttct-------------atgcattggtgttagggtg 36481555  T
Q  116 taatcttaattatttttggttggtgctccttttgcagcactttgactctgtaaatatttagcggtgcttttcctattgcacaccttgtgcgggagagtct 215  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36481556 taatcttaattattttttcttggtgctccttttgcagcactttgactctgtaaatatttagcggtgcttttcctattgcacaccttgtgcgggagagtct 36481655  T
Q  216 accgttgtgcgttaatatcattttcatttgtt 247  Q
    ||||||||| ||||||||||||||||||||||    
T  36481656 accgttgtgtgttaatatcattttcatttgtt 36481687  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 24788512 - 24788460
Alignment:
Q  16 ttatggttgaaaactaaacaggttaattttgcttgtagttaccacgactggtg 68  Q
    |||||||||||| | |||||||| | ||||| || ||||||||||||||||||    
T  24788512 ttatggttgaaatcgaaacaggtaacttttgtttatagttaccacgactggtg 24788460  T

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Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 45854260 - 45854042
Alignment:
Q  16 ttatggttgaaaactaaacaggttaattttgcttgtagttaccacgactggtgtaaccagccgcttctatgcattggttctatgcattgctgttagagtg 115  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||             ||||| |||    
T  45854260 ttatggttgaaaactaaacaaattaattttgcttatagttaccacgactggtgtaaccagccgcttctttgcattggt-------------gttagggtg 45854174  T
Q  116 taatcttaattatttttggttggtgctccttttgcagcactttgactctgtaaatatttagcggtgcttttcctattgcacaccttgtgcgggagagtct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||    
T  45854173 taatcttaattatttttggttggtgctccttttgcagcactttgactctgtaaatatttagcggtgctttttctattatacaccttgtgcgggagagtct 45854074  T
Q  216 accgttgtgcgttaatatcattttcatttgtt 247  Q
    ||||||||| ||||||||||||||||||||||    
T  45854073 accgttgtgtgttaatatcattttcatttgtt 45854042  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 13807846 - 13807771
Alignment:
Q  128 tttttggttggtgctcctttt--gcagcactttgactctgtaaatatttagcggtgcttttcctattgcacacctt 201  Q
    ||||||||||||||||  |||  ||||||| |||||| |||||||||||| ||||| |  |||| |||||||||||    
T  13807846 tttttggttggtgctcggttttggcagcaccttgactttgtaaatatttatcggtgttcctccttttgcacacctt 13807771  T

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Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 41226543 - 41226760
Alignment:
Q  16 ttatggttgaaaactaaacaggttaattttgcttgtagttaccacgactggtgtaaccagccgcttctatgcattggttctatgcattgctgttagagtg 115  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| | ||             ||||| |||    
T  41226543 ttatggttgaaaactaaacaggttaattttgtttatagttaccacgactggtgtaaccagccgcttctatgcactcgt-------------gttagggtg 41226629  T
Q  116 taatcttaattatttttggttggtgctccttttgcagcactttgactctgtaaatatttagcggtgcttttcctattgcacaccttgtgcgggagagtct 215  Q
    ||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41226630 taaccttaattatttttggttggtgcttcttt-gcagcactttgactctgtaaatatttagcggtgcttttcctattgcacaccttgtgcgggagagtct 41226728  T
Q  216 accgttgtgcgttaatatcattttcatttgtt 247  Q
    ||||||||| ||||||||||||||||||||||    
T  41226729 accgttgtgtgttaatatcattttcatttgtt 41226760  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 33334907 - 33334827
Alignment:
Q  129 ttttggttggtgctccttttgc--agcactttgactctgtaaatatttagcggtgcttttcctattgcacaccttgtgcggg 208  Q
    ||||||||||||||| |||||   |||||| |||||||||||||||||  ||||| |  |||| ||||||||||||||||||    
T  33334907 ttttggttggtgctctttttgtgtagcactgtgactctgtaaatattt-tcggtgttcatccttttgcacaccttgtgcggg 33334827  T

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Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 45813954 - 45813736
Alignment:
Q  16 ttatggttgaaaactaaacaggttaattttgcttgtagttaccacgactggtgtaaccagccgcttctatgcattggttctatgcattgctgttagagtg 115  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| || ||||||             ||||| |||    
T  45813954 ttatggttgaaaactaaacaagttaattttgcttatagttaccacgactggtgtaaccagccgtttctctgtattggt-------------gttagggtg 45813868  T
Q  116 taatcttaattatttttggttggtgctccttttgcagcactttgactctgtaaatatttagcggtgcttttcctattgcacaccttgtgcgggagagtct 215  Q
    ||||||||||||||||||||||||||| | |||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  45813867 taatcttaattatttttggttggtgcttcctttgcagcacattaactctgtaaatatttagcggtgcttctcctattgcacaccttgtgcgggagagtat 45813768  T
Q  216 accgttgtgcgttaatatcattttcatttgtt 247  Q
    ||||||| | ||||||||||||||||||||||    
T  45813767 accgttgcgtgttaatatcattttcatttgtt 45813736  T

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Target: chr1; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 27068205 - 27068422
Alignment:
Q  16 ttatggttgaaaactaaacaggttaattttgcttgtagttaccacgactggtgtaaccagccgcttctatgcattggttctatgcattgctgttagagtg 115  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||| |||| ||| |||||             ||||| |||    
T  27068205 ttatggttgaaaactaaaaaggctaattttgcttatagttaccacgaccggtgtaaccagccgtttctttgctttggt-------------gttagggtg 27068291  T
Q  116 taatcttaattatttttggttggtgctccttttgcagcactttgactctgtaaatatttagcggtgcttttcctattgcacaccttgtgcgggagagtct 215  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  27068292 taatctttattatttttggttggtgctccttttgcagcactttgact-tgtaaatatttagcggtgattgtcctattgcacaccttgtgcgggagagtct 27068390  T
Q  216 accgttgtgcgttaatatcattttcatttgtt 247  Q
    |||||||||  | |||||||||||||||||||    
T  27068391 accgttgtgtttgaatatcattttcatttgtt 27068422  T

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Target: chr1; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 38158253 - 38158471
Alignment:
Q  16 ttatggttgaaaactaaacaggttaattttgcttgtagttaccacgactggtgtaaccagccgcttctatgcattggttctatgcattgctgttagagtg 115  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| || ||||||             ||||| |||    
T  38158253 ttatggttgaaaactaaacaggttaattttgtttatagttaccacgactggtgtaaccagccacttctttgtattggt-------------gttagggtg 38158339  T
Q  116 taatcttaattatttttggttggtgctccttttgcagcactttgactctgtaaatatttagcggtgcttttcctattgcacaccttgtgcgggagagtct 215  Q
    ||||||| |||||| ||||||||||||||||||| |||||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||||||||||    
T  38158340 taatctttattattcttggttggtgctccttttgtagcactttgactttgtaaatatttagtggtgatttttctattgcacaccttgtgcgggagagtct 38158439  T
Q  216 accgttgtgcgttaatatcattttcatttgtt 247  Q
    |||||||||  | |||||||||||||||||||    
T  38158440 accgttgtgtttgaatatcattttcatttgtt 38158471  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 37671849 - 37671951
Alignment:
Q  93 ttctatgcattgctgttagagtgtaatcttaattatttttggttggtgctccttttgcagcactttgactctgtaaatatttagcggtgcttttcctatt 192  Q
    |||||||| ||| |||||| |||||||||| || ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |||||||    
T  37671849 ttctatgctttggtgttagggtgtaatctttatcatttttgattggtgctccttttgcagcattttgactctgtaaatatttagcggtgattgtcctatt 37671948  T
Q  193 gca 195  Q
    |||    
T  37671949 gca 37671951  T

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Target: chr1; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 93 - 195
Target Start/End: Complemental strand, 37704300 - 37704198
Alignment:
Q  93 ttctatgcattgctgttagagtgtaatcttaattatttttggttggtgctccttttgcagcactttgactctgtaaatatttagcggtgcttttcctatt 192  Q
    |||||||| ||| |||||| |||||||||| || ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |||||||    
T  37704300 ttctatgctttggtgttagggtgtaatctttatcatttttgattggtgctccttttgcagcattttgactctgtaaatatttagcggtgattgtcctatt 37704201  T
Q  193 gca 195  Q
    |||    
T  37704200 gca 37704198  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 41806371 - 41806486
Alignment:
Q  132 tggttggtgctccttttgcagcactttgactctgtaaatatttagcggtgcttttcctattgcacaccttgtgcgggagagtctaccgttgtgcgttaat 231  Q
    ||||||||||||| |||| ||||| | |||||||||||||| | |||||| || | || |||||||||||||||||| || ||||| | || |   ||||    
T  41806371 tggttggtgctccctttgtagcacctagactctgtaaatatgttgcggtgtttcttcttttgcacaccttgtgcgggggaatctactgctgagttataat 41806470  T
Q  232 atcattttcatttgtt 247  Q
    ||||||||||||||||    
T  41806471 atcattttcatttgtt 41806486  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 41806272 - 41806333
Alignment:
Q  19 tggttgaaaactaaacaggttaattttgcttgtagttaccacgactggtgtaaccagccgct 80  Q
    ||||||||| |||||||||||||||| || |  |||||| |||| |||||||||| ||||||    
T  41806272 tggttgaaatctaaacaggttaatttcgcatacagttactacgattggtgtaaccggccgct 41806333  T

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Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 101 - 245
Target Start/End: Complemental strand, 6239695 - 6239551
Alignment:
Q  101 attgctgttagagtgtaatcttaattatttttggttggtgctccttttgcagcactttgactctgtaaatatttagcggtgcttttcctattgcacacct 200  Q
    |||| |||||| |||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  6239695 attggtgttagggtgtaatcttaattattttttgttggtgctccctttggagcacattgactctgtaaatatttagcggtgcttctcctattgcacacct 6239596  T
Q  201 tgtgcgggagagtctaccgttgtgcgttaatatcattttcatttg 245  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  6239595 tgtgcgggagagtctaccgttgtgtgttaatatcattttcatttg 6239551  T

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Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 106 - 247
Target Start/End: Complemental strand, 2473503 - 2473363
Alignment:
Q  106 tgttagagtgtaatcttaattatttttggttggtgctccttttgcagcactttgactctgtaaatatttagcggtgcttttcctattgcacaccttgtgc 205  Q
    |||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||     
T  2473503 tgttagggtgtaatctttattatttttggttgatgctccttctgcagcactttgactctgtaaatatttagcggtgattgtcctattgcacaccttgtgt 2473404  T
Q  206 gggagagtctaccgttgtgcgttaatatcattttcatttgtt 247  Q
    |||||||||||||||||||  | |||||||||||||||||||    
T  2473403 gggagagtctaccgttgtg-ttgaatatcattttcatttgtt 2473363  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 2473579 - 2473514
Alignment:
Q  16 ttatggttgaaaactaaacaggttaattttgcttgtagttaccacgactggtgtaaccagccgctt 81  Q
    |||||||||||| ||||||||| | ||||||||| |||||||  |||||||||||||||||| |||    
T  2473579 ttatggttgaaatctaaacaggctgattttgcttatagttactgcgactggtgtaaccagccactt 2473514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2055 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold2055
Description:

Target: scaffold2055; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 247
Target Start/End: Original strand, 710 - 918
Alignment:
Q  25 aaaactaaacaggttaattttgcttgtagttaccacgactggtgtaaccagccgcttctatgcattggttctatgcattgctgttagagtgtaatcttaa 124  Q
    |||||||| |||||||||||||||| |||||| || ||||||||||| ||||||||||| ||| |||||              |||| |||||||||| |    
T  710 aaaactaatcaggttaattttgcttatagttatcatgactggtgtaatcagccgcttctttgctttggtc-------------ttagggtgtaatcttta 796  T
Q  125 ttatttttggttggtgctccttttgcagcactttgactctgtaaatatttagcggtgcttttcctattgcacaccttgtgcgggagagtctaccgttgtg 224  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |||| ||||||||||| ||| ||||||||||||||||||    
T  797 ttatttttggttggtgctcctattgcagcactttgactctgtaaatatttagtggtgattgtcct-ttgcacaccttatgcaggagagtctaccgttgtg 895  T
Q  225 cgttaatatcattttcatttgtt 247  Q
      | |||||||||||||||||||    
T  896 tttgaatatcattttcatttgtt 918  T

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