View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_low_4 (Length: 530)
Name: NF11833_low_4
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 42664306 - 42664634
Alignment:
| Q |
16 |
atgaaacatatataccttgtggagatggaaggatgcatcaccaatttcaataataacatcacttggaagtccagtagagcagagcctagagatggagatt |
115 |
Q |
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| T |
42664306 |
atgaaacatatataccttgtggagatggaaggatgcatcaccaatttcaataataacatcacttggaagtccagtagagcagagcctagagatggagatt |
42664405 |
T |
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| Q |
116 |
taagatacaacaatgttaatgatcataaaccataatgatatttacctcataaaaatggtgaattatgtgtagaataggataatgtaatgtaattaaaata |
215 |
Q |
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| T |
42664406 |
taagatacaacaatgttaatgatcataaaccataatgatatttacctcataaaaatggtgaattatgtgtagaataggataatgtaatgtaattaaaata |
42664505 |
T |
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| Q |
216 |
attcgtaactatcagattgtgaatttaatcgaccaacgtgcagaattaaacatttcnnnnnnnc-ttcttcatggtagcaatctagcatagactagaatc |
314 |
Q |
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| T |
42664506 |
attcgtaactatcagattgtgaatttaatcgaccaacgtgcataattaaacatttctctttttctttcttcatggtagcaatctagcatggactagaatc |
42664605 |
T |
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| Q |
315 |
gaaagactctcttcaattaccaatattca |
343 |
Q |
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| T |
42664606 |
gaaaaactctcttcaattaccaatattca |
42664634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 390 - 513
Target Start/End: Original strand, 42664718 - 42664845
Alignment:
| Q |
390 |
gacttactatgattcaatattttaacaaaactacgctttagagtatatnnnnnnnnt----caccgtatttcatcatattggcatttcaaacatgcaacg |
485 |
Q |
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| T |
42664718 |
gacttactatgattcaatattttaacaaaactacgctttagagtataataaaaaaaaaatacaccgtatttcatcatattggcatttcaaacatgcaacg |
42664817 |
T |
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| Q |
486 |
agtaaaggatgagaaaggaacatgttat |
513 |
Q |
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| T |
42664818 |
agtaaaggatgagaaaggaacatgttat |
42664845 |
T |
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