View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_low_40 (Length: 275)
Name: NF11833_low_40
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 14538643 - 14538377
Alignment:
| Q |
11 |
caaaggcatgctaaaaactggaaaagcattccaagaaatatatccctttcatttccacaacagattaccagaactattacttctgatatcattaatcaac |
110 |
Q |
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| T |
14538643 |
caaaggcatgctaaaaactggaaaagcattccaagaaatatatccctttcatttccacaacagattaccagaattattacttctgatatcattaatcaac |
14538544 |
T |
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| Q |
111 |
taataatggttgggggacgaaagtagatgacggaaatgctatttctgcacaaaatcaatcaaacagccaccttggtctgtattcctctcctacataaagg |
210 |
Q |
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| T |
14538543 |
taataatggttgggggacgaaagtatatgacggaaatgctatttctgcacaaaatcaatcaaacagccaccttggtctgtattcctctcctacataaagg |
14538444 |
T |
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| Q |
211 |
------------------ctagactgactgacacaacagctgtgctcgccataaagggagaagatcc |
259 |
Q |
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| T |
14538443 |
cagacagtcagattttctctagactgactgacacaacagctgtgctcgccataaagggagaagatcc |
14538377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 14554125 - 14553955
Alignment:
| Q |
12 |
aaaggcatgctaaaaactggaaaagcattccaagaaatatatccctttcatttccacaacagattaccagaactattact-tctgatatcattaatcaac |
110 |
Q |
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| T |
14554125 |
aaaggcatgctaaaacctg-aaaagcctcccaagaaatacatctctttcattttcacaacacattaccaaaagtatgactgtgtgagatcagttataaac |
14554027 |
T |
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| Q |
111 |
taataatggttgggggacgaaagtagatgacggaaatgctatttctgcacaaaatcaatcaaacagccacct |
182 |
Q |
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| T |
14554026 |
taataagggttcgggaatgatagtagatgatgccaatactatttatgcacaaaatcaatcaaacaaccacct |
14553955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 14526168 - 14526122
Alignment:
| Q |
12 |
aaaggcatgctaaaaactggaaaagcattccaagaaatatatccctt |
58 |
Q |
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| T |
14526168 |
aaaggcacgctaaaacctggaaaagccttctaagaaatatatccctt |
14526122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 14548667 - 14548602
Alignment:
| Q |
15 |
ggcatgctaaaaactggaaaagcattccaagaaatatatccctttcatttccacaacagattacca |
80 |
Q |
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| T |
14548667 |
ggcatgctgaaacctgaaaaagctttccaagaaatacatcccttccattttcacaagacattacca |
14548602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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