View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11833_low_41 (Length: 273)

Name: NF11833_low_41
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11833_low_41
NF11833_low_41
[»] chr8 (6 HSPs)
chr8 (12-265)||(5368765-5369022)
chr8 (30-140)||(4140007-4140119)
chr8 (30-140)||(10188092-10188204)
chr8 (30-140)||(917266-917378)
chr8 (30-87)||(28844850-28844907)
chr8 (81-140)||(28844596-28844657)
[»] chr4 (8 HSPs)
chr4 (30-140)||(53828988-53829100)
chr4 (30-140)||(21631072-21631184)
chr4 (30-140)||(21804614-21804726)
chr4 (30-129)||(34735820-34735920)
chr4 (30-87)||(2503159-2503216)
chr4 (30-87)||(46094300-46094357)
chr4 (81-140)||(2503407-2503468)
chr4 (81-140)||(46093986-46094047)
[»] chr3 (4 HSPs)
chr3 (30-140)||(48268006-48268118)
chr3 (30-140)||(35872103-35872215)
chr3 (30-87)||(52351654-52351711)
chr3 (81-140)||(52351401-52351462)
[»] chr5 (3 HSPs)
chr5 (30-140)||(37300231-37300342)
chr5 (30-87)||(36993043-36993100)
chr5 (81-140)||(36992729-36992790)
[»] chr7 (8 HSPs)
chr7 (31-146)||(5433047-5433161)
chr7 (30-140)||(47232101-47232214)
chr7 (30-87)||(5766578-5766635)
chr7 (30-87)||(25417732-25417789)
chr7 (30-87)||(39065323-39065380)
chr7 (81-140)||(5766893-5766954)
chr7 (81-140)||(25417981-25418042)
chr7 (81-140)||(39065510-39065571)
[»] chr1 (6 HSPs)
chr1 (30-140)||(22910958-22911071)
chr1 (30-87)||(13788157-13788214)
chr1 (30-87)||(25805928-25805985)
chr1 (30-73)||(39625267-39625310)
chr1 (81-140)||(13787904-13787965)
chr1 (81-140)||(25806177-25806238)
[»] chr2 (6 HSPs)
chr2 (30-140)||(29457077-29457187)
chr2 (34-140)||(43565868-43565974)
chr2 (30-87)||(7572248-7572305)
chr2 (30-87)||(16666843-16666900)
chr2 (81-140)||(7572497-7572558)
chr2 (81-140)||(16667092-16667153)
[»] chr6 (3 HSPs)
chr6 (30-87)||(13431610-13431667)
chr6 (81-140)||(13431859-13431920)
chr6 (34-128)||(18884319-18884415)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 5369022 - 5368765
Alignment:
Q  12 aaaaatgaaaatttataattttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacatt 111  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5369022 aaaaatgataatttataattttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacatt 5368923  T
Q  112 cttttctcataacttataatatattaaaacagaacccaaactctataggattgatttcatgttctagagctatatatatggtgtgt----gtgtaacgac 207  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||    
T  5368922 cttttctcataacttataatatattaaaacagaacccgaactctataggattgatttcatgttctagagctatatatatggtgtgtgtgtgtgtaacgac 5368823  T
Q  208 acacatgagtgaaactatattgattgtttcatatttcaaaaatattgttcatctcatt 265  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  5368822 acacatgagtgaaactatattgattgtttcatatttcaacaatattgttcttctcatt 5368765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 4140119 - 4140007
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat--tcttttctcataactta 127  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||| | ||||||||| || ||||||||||| |||||||  ||||||  |||||||||    
T  4140119 ttttttcttgatttaaattgtatttcaaataattcaagtaaaaaataataatttatttaatatggttcctaatattcacatactctttttccataactta 4140020  T
Q  128 taatatattaaaa 140  Q
    |||||||||||||    
T  4140019 taatatattaaaa 4140007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 10188204 - 10188092
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat--tcttttctcataactta 127  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||| | ||||||||| || ||| ||||||| |||||||  ||||||  |||||||||    
T  10188204 ttttttcttgatttaaattgtatttcaaataattcaagtaaaaaataataatttatttaatatggctcctaatattcacatactctttttccataactta 10188105  T
Q  128 taatatattaaaa 140  Q
    |||||||||||||    
T  10188104 taatatattaaaa 10188092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 917266 - 917378
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataactta 127  Q
    ||||||||||||||| ||||||||||||||| || |||||||||| ||| |||| ||| || | ||||||||| |||||  ||||||||| |||||| ||    
T  917266 ttttttcttgatttacattgtatttcaaatggttgaagtaaaaaaataatatttttttaatatagttcctaattttcacatattcttttcccataaccta 917365  T
Q  128 taatatattaaaa 140  Q
    |||||||||||||    
T  917366 taatatattaaaa 917378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 28844907 - 28844850
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 87  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  28844907 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 28844850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 28844657 - 28844596
Alignment:
Q  81 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 140  Q
    ||||||| || ||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  28844657 tttatttaatatggttcctaatcttcacacattcttttcccataacttataatatattaaaa 28844596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 53828988 - 53829100
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataactta 127  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||| || |||||||||||||||||  ||||||||| |||||||||    
T  53828988 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttatttaatatggttcctaatcttcacatattcttttcccataactta 53829087  T
Q  128 taatatattaaaa 140  Q
    |||||||||||||    
T  53829088 taatatattaaaa 53829100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 21631072 - 21631184
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat--tcttttctcataactta 127  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| | ||||||||| || ||||||||||| |||||||  ||||||  |||||||||    
T  21631072 ttttttcttgatttaaattgtatttcgaataattcaagtaaaaaataataatttatttaatatggttcctaatattcacatactctttttccataactta 21631171  T
Q  128 taatatattaaaa 140  Q
    |||||||||||||    
T  21631172 taatatattaaaa 21631184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 21804726 - 21804614
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat--tcttttctcataactta 127  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||||| | ||||||||| || ||||||||||| |||||||  ||||||  |||||||||    
T  21804726 ttttttcttgatttaaattgtatttcgaataattcaagtaaaaaataataatttatttaatatggttcctaatattcacatactctttttccataactta 21804627  T
Q  128 taatatattaaaa 140  Q
    |||||||||||||    
T  21804626 taatatattaaaa 21804614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 34735820 - 34735920
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataactta 127  Q
    ||||||||||||||| |||||||| |||||| || ||||||||||| ||||||||||| || || ||||||||||||||  ||||||||| |||||||||    
T  34735820 ttttttcttgatttacattgtatt-caaatggttgaagtaaaaaataaaaatttatttaatatgattcctaatcttcacatattcttttcccataactta 34735918  T
Q  128 ta 129  Q
    ||    
T  34735919 ta 34735920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 2503159 - 2503216
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 87  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  2503159 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 2503216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 46094357 - 46094300
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 87  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  46094357 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 46094300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 2503407 - 2503468
Alignment:
Q  81 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 140  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  2503407 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 2503468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 46094047 - 46093986
Alignment:
Q  81 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 140  Q
    ||||||| || ||||| ||||||||||||  |||||||| ||||||||||||||||||||||    
T  46094047 tttatttaatatggtttctaatcttcacacattcttttcccataacttataatatattaaaa 46093986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 48268118 - 48268006
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatctt--cacattcttttctcataactta 127  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||| |||||||||||||||||  |||||| ||||| |||||||||    
T  48268118 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttatttaatgtggttcctaatcttcacacatttttttcccataactta 48268019  T
Q  128 taatatattaaaa 140  Q
    |||||||||||||    
T  48268018 taatatattaaaa 48268006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 35872215 - 35872103
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataactta 127  Q
    |||||||||||||||  |||||||||||||| |||||||||||||| | ||||||||| || |||||| ||||||||||  ||||||||| |||||||||    
T  35872215 ttttttcttgatttaccttgtatttcaaatggttcaagtaaaaaataataatttatttaatatggttcataatcttcacaaattcttttcccataactta 35872116  T
Q  128 taatatattaaaa 140  Q
    |||||||||||||    
T  35872115 taatatattaaaa 35872103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 52351711 - 52351654
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 87  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  52351711 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 52351654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 52351462 - 52351401
Alignment:
Q  81 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 140  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  52351462 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 52351401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 37300231 - 37300342
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataactta 127  Q
    |||||||||||||||||||||||| |||||| |||||||||||||| | ||||||||| || || ||||||||||||||  ||||||||| |||||||||    
T  37300231 ttttttcttgatttatattgtatt-caaatggttcaagtaaaaaataataatttatttaatatgattcctaatcttcacatattcttttcccataactta 37300329  T
Q  128 taatatattaaaa 140  Q
    |||||||||||||    
T  37300330 taatatattaaaa 37300342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 36993100 - 36993043
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 87  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  36993100 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 36993043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 36992790 - 36992729
Alignment:
Q  81 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 140  Q
    ||||||| || ||||| ||||||||||||  |||||||| ||||||||||||||||||||||    
T  36992790 tttatttaatatggtttctaatcttcacacattcttttcccataacttataatatattaaaa 36992729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 5433161 - 5433047
Alignment:
Q  31 tttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat-tcttttctcataacttata 129  Q
    |||||||||||||| |||||||||||||||  ||||||||||||  |  ||||||||||||||||||||||||||||||| | ||| | |||||| ||||    
T  5433161 tttttcttgatttacattgtatttcaaatggctcaagtaaaaaa--atcatttatttcatgtggttcctaatcttcacatgtttttccccataacctata 5433064  T
Q  130 atatattaaaacagaac 146  Q
    |||||||||||||||||    
T  5433063 atatattaaaacagaac 5433047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 47232101 - 47232214
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataa-ctt 126  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||| || || ||||||||||||||  ||||||||| |||||  ||    
T  47232101 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttatttaatatgattcctaatcttcacatattcttttcccataatttt 47232200  T
Q  127 ataatatattaaaa 140  Q
    ||||||||||||||    
T  47232201 ataatatattaaaa 47232214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 5766578 - 5766635
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 87  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  5766578 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 5766635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 25417732 - 25417789
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 87  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  25417732 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 25417789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 39065323 - 39065380
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 87  Q
    ||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||    
T  39065323 ttttttcttgatttatattgtatttcaaacggttcaagtaaaaaataataatttattt 39065380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 5766893 - 5766954
Alignment:
Q  81 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 140  Q
    ||||||| || ||||| ||||||||||||  |||||||| ||||||||||||||||||||||    
T  5766893 tttatttaatatggtttctaatcttcacacattcttttcccataacttataatatattaaaa 5766954  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 25417981 - 25418042
Alignment:
Q  81 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 140  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  25417981 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 25418042  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 39065510 - 39065571
Alignment:
Q  81 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 140  Q
    ||||||| || |||||| |||||||||||  |||||||| ||||||||||||||||||||||    
T  39065510 tttatttaatatggttcttaatcttcacacattcttttcccataacttataatatattaaaa 39065571  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 22910958 - 22911071
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaa-aatttatttcatgtggttcctaatcttcacat--tcttttctcataactt 126  Q
    ||||||||| ||||| ||||||||| ||||| ||||||||||| | ||| ||||||||| || |||||||||||||||| ||  ||||||| ||||||||    
T  22910958 ttttttcttaatttacattgtattttaaatggttcaagtaaaataataataatttatttaatatggttcctaatcttcatatattcttttcccataactt 22911057  T
Q  127 ataatatattaaaa 140  Q
    ||||||||||||||    
T  22911058 ataatatattaaaa 22911071  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 13788214 - 13788157
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 87  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  13788214 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 13788157  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 25805928 - 25805985
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 87  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  25805928 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 25805985  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 39625310 - 39625267
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaa 73  Q
    ||||||||||||||| |||||||||||||| |||||||||||||    
T  39625310 ttttttcttgatttacattgtatttcaaataattcaagtaaaaa 39625267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 13787965 - 13787904
Alignment:
Q  81 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 140  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  13787965 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 13787904  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 25806177 - 25806238
Alignment:
Q  81 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 140  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  25806177 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 25806238  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 29457187 - 29457077
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataactta 127  Q
    ||||||||||||||| ||||||||||||||| || |||||||||| ||| |||| ||| || ||||||||||| |||||  ||||||||| |||||| ||    
T  29457187 ttttttcttgatttacattgtatttcaaatggttgaagtaaaaaa-taatattt-tttaatatggttcctaattttcacatattcttttcccataaccta 29457090  T
Q  128 taatatattaaaa 140  Q
    |||||||||||||    
T  29457089 taatatattaaaa 29457077  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 43565974 - 43565868
Alignment:
Q  34 ttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--attcttttctcataacttataat 131  Q
    ||||||||||| ||||||||||||||| || |||||||||| ||| |||| ||| || ||||||||||| |||||  ||||||||| |||||| ||||||    
T  43565974 ttcttgatttacattgtatttcaaatggttgaagtaaaaaa-taatattt-tttaatatggttcctaattttcacatattcttttcccataacctataat 43565877  T
Q  132 atattaaaa 140  Q
    |||||||||    
T  43565876 atattaaaa 43565868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 7572248 - 7572305
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 87  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  7572248 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 7572305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 16666843 - 16666900
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 87  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  16666843 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 16666900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 7572497 - 7572558
Alignment:
Q  81 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 140  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  7572497 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 7572558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 16667092 - 16667153
Alignment:
Q  81 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 140  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  16667092 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 16667153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 13431610 - 13431667
Alignment:
Q  30 ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 87  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  13431610 ttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 13431667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 13431859 - 13431920
Alignment:
Q  81 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 140  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  13431859 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 13431920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 18884415 - 18884319
Alignment:
Q  34 ttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttc--acattcttttctcataacttat 128  Q
    ||||||||||| |||||||||||||| ||||||||||||||  | | ||||||| || | |||| ||||||||  | ||||||||| || |||||||    
T  18884415 ttcttgatttacattgtatttcaaataattcaagtaaaaaacaatagtttatttaatatagttcataatcttcgtatattcttttcccacaacttat 18884319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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