View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_low_43 (Length: 265)
Name: NF11833_low_43
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 39131125 - 39131373
Alignment:
| Q |
7 |
tacggtacggttatgcaaagaagattaaccatggattctgatggtaatattcgtgtttacagtcgaaaaagtttgttagaaaattggtatgtttcatggc |
106 |
Q |
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| T |
39131125 |
tacggtacggttatgcaaagaagattaaccatggattctgatggtaatattcgtgtttacagtcgaaaaagtttgttagaaaattggtatgtttcatggc |
39131224 |
T |
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| Q |
107 |
aagtcatatatgatacatgcaccattcatggaatttgtggtgaaaatagcacttgtagctatcatccgaaaaagggtaagaagtgttcttgtttgcaagg |
206 |
Q |
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| T |
39131225 |
aagtcatatatgatacatgcaccattcatggaatttgtggtgaaaatagcacttgtagctatcatccgaaaaagggtaagaagtgttcttgtttgcaagg |
39131324 |
T |
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| Q |
207 |
atataaagtgaagaaccataatgattggtcttatggttgtgagcctatg |
255 |
Q |
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| T |
39131325 |
atataaagtgaagaaccataatgattggtcttatggttgtgagcctatg |
39131373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 21112648 - 21112405
Alignment:
| Q |
10 |
ggtacggttatgcaaagaagattaaccatggattctgatggtaatattcgtgtttacagtcgaaaaagtttgttagaaaattggtatgtttcatggcaag |
109 |
Q |
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| T |
21112648 |
ggtatggttatgcaaagaagattaaccttggattctgatggtaatattcgagtttacagccgaaaaaacttgttagaaaattggtatgtttcatggcaag |
21112549 |
T |
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| Q |
110 |
tcatatatgatacatgcaccattcatggaatttgtggtgaaaatagcacttgtagctatcatccgaaaaagggtaagaagtgttcttgtttgcaaggata |
209 |
Q |
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| T |
21112548 |
tcatatctgacacctgcatcatagatggaatttgtggtgcaaatagcgcttgtagctatgatcctaaaaaaggtaagaaatgctcttgtttgccggggta |
21112449 |
T |
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| Q |
210 |
taaagtgaagaaccataatgattggtcttatggttgtgagccta |
253 |
Q |
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| T |
21112448 |
taaaatgaagaaccataatgattggtcttatggatgtgaaccta |
21112405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 18659770 - 18659525
Alignment:
| Q |
10 |
ggtacggttatgcaaagaagattaaccatggattctgatggtaatattcgtgtttacagtcgaaaaagtttgttagaaaattggtatgtttcatggcaag |
109 |
Q |
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| T |
18659770 |
ggtatggtcatgcaaagaaaattaaccatggattctgatggtaatgttcgagtttacagtcgaaaaaacttgtcagcaaattggcatgtttcatggcaag |
18659671 |
T |
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| Q |
110 |
tcatatatgatacatgcaccattcatggaatttgtggtgaaaatagcacttgtagctatcatccgaaaaagggtaagaagtgttcttgtttgcaaggata |
209 |
Q |
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| T |
18659670 |
tcatacctgacacttgcatcattcatggagtttgtggtgaaaatagcacttgcagctatgatcctaaaaagggtaagaaatgctcttgtttgccagggta |
18659571 |
T |
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| Q |
210 |
taaagtgaagaaccataatgattggtcttatggttgtgagcctatg |
255 |
Q |
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| T |
18659570 |
taaagtgaagaaccataatgatttctcttctggttgtgaacctatg |
18659525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 21124042 - 21123804
Alignment:
| Q |
10 |
ggtacggttatgcaaagaagattaaccatggattctgatggtaatattcgtgtttacagtcgaaaaagtttgttagaaaattggtatgtttcatggcaag |
109 |
Q |
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|||| |||||||||||||| |||||||||||||| |||||||||| |||| ||||| |||||||||| ||| |||||||||||||||||||||||||| |
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| T |
21124042 |
ggtatggttatgcaaagaaaattaaccatggattatgatggtaatgttcgagtttatagtcgaaaaaacatgtcagaaaattggtatgtttcatggcaag |
21123943 |
T |
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| Q |
110 |
tcatatatgatacatgcaccattcatggaatttgtggtgaaaatagcacttgtagctatcatccgaaaaagggtaagaagtgttcttgtttgcaaggata |
209 |
Q |
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| T |
21123942 |
tcatatctgacacttgcatcattcatggagtttgtggtgcaaatagcacttgcagctatgatcctaaaaagggtaagaaatgctcttgtttgccggggta |
21123843 |
T |
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| Q |
210 |
taaagtgaagaaccataatgattggtcttatggttgtga |
248 |
Q |
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| T |
21123842 |
taaagtgaagaaccatagtgatttctcttctggttgtga |
21123804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 21131603 - 21131370
Alignment:
| Q |
15 |
ggttatgcaaagaagattaaccatggattctgatggtaatattcgtgtttacagtcgaaaaagtttgttagaaaattggtatgtttcatggcaagtcata |
114 |
Q |
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| T |
21131603 |
ggttatgcaaagaaggttgagcatggattctgacggtaatattcgtgtttacagtcgaaaaaacttgtcaaaaaattggtatgtttcatggcaagtcgta |
21131504 |
T |
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| Q |
115 |
tatgatacatgcaccattcatggaatttgtggtgaaaatagcacttgtagctatcatccgaaaaagggtaagaagtgttcttgtttgcaaggatataaag |
214 |
Q |
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| T |
21131503 |
catgatccttgcaccatacatggaatttgtggcgcaaacagctcttgcatctatgatcctaatatgggtaaaaaatgctcttgtttgccaggatataaag |
21131404 |
T |
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| Q |
215 |
tgaagaaccataatgattggtcttatggttgtga |
248 |
Q |
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| T |
21131403 |
tgaagaaccatagtgattggtcttatggttgtga |
21131370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 255
Target Start/End: Original strand, 21107299 - 21107468
Alignment:
| Q |
86 |
aaaattggtatgtttcatggcaagtcatatatgatacatgcaccattcatggaatttgtggtgaaaatagcacttgtagctatcatccgaaaaagggtaa |
185 |
Q |
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|||||||||||||||||||||||| ||| |||| | | |||| |||||| |||||||| || |||||||| ||||| ||| |||| || | || | |
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| T |
21107299 |
aaaattggtatgtttcatggcaagccatttatggtgcttgcatagctcatgggatttgtggagataatagcacatgtagttataatcctaagcatggaag |
21107398 |
T |
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| Q |
186 |
gaagtgttcttgtttgcaaggatataaagtgaagaaccataatgattggtcttatggttgtgagcctatg |
255 |
Q |
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|| ||||||||| | | ||| |||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21107399 |
aaaatgttcttgtattccagggtatagagtgaagaaccatagtgattggtcttatggttgtgagcctatg |
21107468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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