View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_low_44 (Length: 252)
Name: NF11833_low_44
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 21690203 - 21690443
Alignment:
| Q |
1 |
tgatctttttaattttatgtgtttaatggttagttttaaaaatataaaactaatttgtggcttaattataacaaaaataatttattatcctctcttatgc |
100 |
Q |
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| T |
21690203 |
tgatctttttaattttatgtgtttaatggttagttttaaaaatataaaactaatttgtggcttaattataacaaaaataatttattatcctctcttatgc |
21690302 |
T |
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| Q |
101 |
cttaaatatagaaaaaatagnnnnnnnnnaacctttcttatgtcatggatttaggaaaacagtttattcttatatctattaatattttaatctaactagt |
200 |
Q |
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| T |
21690303 |
cttaaatatagaaaaaatag-ttttttttaacctttcttatgtcatggatttaggaaaacagtttattcttatatctattaatattttaatctaactagt |
21690401 |
T |
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| Q |
201 |
ttacatataaaataggctaaactacacttttcgtcccctatg |
242 |
Q |
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| T |
21690402 |
ttacatataaaataggctaaactacacttttcgtcccctatg |
21690443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 8369732 - 8369813
Alignment:
| Q |
132 |
cctttcttatgtcatggatttaggaaaacagtttattcttatatctattaatattttaatctaactagtttacatataaaata |
214 |
Q |
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| T |
8369732 |
cctttcttttgtcatggatttagaatatcagtttattcttatat-ttttaatctcttaatctaactaatttacatataaaata |
8369813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 8397941 - 8398016
Alignment:
| Q |
136 |
tcttatgtcatggatttaggaaaacagtttattcttatatctattaatattttaatctaactagtttacatataaa |
211 |
Q |
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| T |
8397941 |
tcttatgttatggatttagaacagtagtttattcttctctcttttaatatattaatctaactaatttacatgtaaa |
8398016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 11527446 - 11527391
Alignment:
| Q |
2 |
gatctttttaattttatgtgtttaatggttagttttaaaaatataaaactaatttg |
57 |
Q |
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|||||| |||||||||||||| ||||||| | ||| ||||||||||||||||||| |
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| T |
11527446 |
gatcttcttaattttatgtgtctaatggtcatatttcaaaatataaaactaatttg |
11527391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 242
Target Start/End: Original strand, 22191044 - 22191073
Alignment:
| Q |
213 |
taggctaaactacacttttcgtcccctatg |
242 |
Q |
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| T |
22191044 |
taggctaaactacacttttcgtcccctatg |
22191073 |
T |
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