View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_low_45 (Length: 251)
Name: NF11833_low_45
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 50457955 - 50458107
Alignment:
| Q |
1 |
tagaaaatcaagagattcttctatgcccctcgttttgtatttgtgttatttttaatggtaagtttgtgtatataaacactgtttgttgttattctaacac |
100 |
Q |
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| T |
50457955 |
tagaaaatcaagagattcttctatgcccctcgttttgtatttgtgttattcttaatggtaagtttgtgtagataagcactgtttgctgttattctaacac |
50458054 |
T |
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| Q |
101 |
cttccatttatttactcattctgagtgccattcaaattataatttacaattgt |
153 |
Q |
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| T |
50458055 |
cttccatttatttactcattctgagtgccattcaaattataatttgcaattgt |
50458107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 50458134 - 50458198
Alignment:
| Q |
178 |
caccttccatttaaagagttg-ctctatagtaacaattcttatgtattcagatttcccttctctg |
241 |
Q |
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||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50458134 |
caccttccatttaaagagttgaccctacagtaacaattcttatgtattcagatttcccttctctg |
50458198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 33614633 - 33614600
Alignment:
| Q |
113 |
tactcattctgagtgccattcaaattataattta |
146 |
Q |
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| T |
33614633 |
tactcattctgagtgccattcaaaatataattta |
33614600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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