View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_low_52 (Length: 240)
Name: NF11833_low_52
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14180860 - 14181082
Alignment:
| Q |
1 |
ccatccatgtgtctctaggagcttttctaacgccgaaatactctacaacgctttcagaaaccccagcaacattactcaataatgaggctccccatgccag |
100 |
Q |
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| T |
14180860 |
ccatccatgtgtctctaggagcttttctaacgccgaaatactctacaacgctttcagaaaccccagcaacattactcaataatgaggttccccatgccag |
14180959 |
T |
|
| Q |
101 |
ccaacctgtctgtgcttgctgattttgagtttcagccatgtttttctgttgctcttcatcaatgtgttcaagccaccgcgtagccatgaattccttcatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14180960 |
ccaacctgtctgtgcttgctgattttgagtttcagccatgtttttctgtcgctcttcatcaatgtgttcaagccaccgcttagccatgaattccttcatc |
14181059 |
T |
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| Q |
201 |
gcctcaactccttgatttaaaac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
14181060 |
gcctcaactccttgatttaaaac |
14181082 |
T |
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