View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11833_low_55 (Length: 238)
Name: NF11833_low_55
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 35130745 - 35130968
Alignment:
| Q |
1 |
ttagttaaatgcaattaattttcttgatttaaaataaaatgtataaggtcatgtttatggtgtttggctctgttgaatttgcttatctgaaatattatca |
100 |
Q |
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| T |
35130745 |
ttagttaaatgcaattaattttcttgatttaaaataaaatgtataaggtcatgtttatggtgtttggctctgttgaatttgcttatctgaaatattatca |
35130844 |
T |
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| Q |
101 |
tgtgaattagtacacatttttatcactatcaagctatttactctgggctttgcaggtttcattcaatgaggagaacatatggaaacagattcatgtcatc |
200 |
Q |
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| T |
35130845 |
tgtgaattagtacacatttttatcactatcaagctatttactctgggctttgcaggtttcattcaatgaggagaacatatggaaacagattcatgtcatc |
35130944 |
T |
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| Q |
201 |
cgtaagataataggatatgaaggt |
224 |
Q |
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|||| ||||||||||||||||||| |
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| T |
35130945 |
cgtacgataataggatatgaaggt |
35130968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 26778727 - 26778664
Alignment:
| Q |
80 |
tgcttatctgaaatattatcatgtgaattagtacacatttttatcactatcaagctatttactct |
144 |
Q |
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| T |
26778727 |
tgcttatctgaa-tattatcatatgatttaggtcacatttttgtcactgtcaggctatttactct |
26778664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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