View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11833_low_58 (Length: 221)
Name: NF11833_low_58
Description: NF11833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11833_low_58 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 6917634 - 6917823
Alignment:
| Q |
16 |
cacagatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6917634 |
cacagatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgca |
6917733 |
T |
|
| Q |
116 |
agctgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6917734 |
agctgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaaatggtctgattctgttgcaggttctcaggttgaaat |
6917823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 6967971 - 6968159
Alignment:
| Q |
17 |
acagatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaa |
116 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6967971 |
acagataaagcaccaatgttttgattaaagttctctattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaa |
6968070 |
T |
|
| Q |
117 |
gctgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaat |
205 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||| | ||||| | |||||||| || |||||||| |||||||||||| |
|
|
| T |
6968071 |
gctgagatggagtacatcccttcttagcagccagttcattaaccctctcaaatatagtctgattttgctgcaggttttcaggttgaaat |
6968159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 6920350 - 6920539
Alignment:
| Q |
16 |
cacagatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgca |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || | |||| |
|
|
| T |
6920350 |
cacagatagagcaccgatgttttgattcaagttctcaattttggtggttccaggtattgggcacacatcatttccttggtgatgaagccaggctagtgca |
6920449 |
T |
|
| Q |
116 |
agctgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaat |
205 |
Q |
| |
|
||||| | ||||||||||||||||||||| |||| |||||||||||||||||| | ||||||||||| |||||||| |||| ||||||| |
|
|
| T |
6920450 |
agctgaggtggagtacatcccttctttgtagccaattcattaactttgtcaaatatagtctgattctgctgcaggttttcagtttgaaat |
6920539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 6957862 - 6957673
Alignment:
| Q |
16 |
cacagatagagcaccgatgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgca |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || | |||| |
|
|
| T |
6957862 |
cacagatagagcaccgatgttttgattcaagttctcaattttggtggttccaggtattgggcacacatcatttccttggtgatgaagccaggctagtgca |
6957763 |
T |
|
| Q |
116 |
agctgggatggagtacatcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaat |
205 |
Q |
| |
|
||||| | ||||||||||||||||||||| |||| |||||||||||||||||| | ||||||||||| |||||||| |||| ||||||| |
|
|
| T |
6957762 |
agctgaggtggagtacatcccttctttgtagccaattcattaactttgtcaaatatagtctgattctgctgcaggttttcagtttgaaat |
6957673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 6960450 - 6960277
Alignment:
| Q |
32 |
atgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccatgccaatgcaagctgggatggagtac |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||||| |
|
|
| T |
6960450 |
atgttttgattaaagttctcaattttggtggttccaggtatcgggcacacgtcgtttccttggtgatgaagccaggctagtgcaagctgagatggagtac |
6960351 |
T |
|
| Q |
132 |
atcccttctttgtggccagttcattaactttgtcaaaagtggtctgattctgttgcaggttctcaggttgaaat |
205 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||| | ||||||||||| |||||||| |||||||||||| |
|
|
| T |
6960350 |
atcccttctttacagccagttcattaaccttatcaaatatagtctgattctgctgcaggttttcaggttgaaat |
6960277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University